|
Name : MmarC6_0040 (MmarC6_0040) Accession : YP_001548098.1 Strain : Methanococcus maripaludis C6 Genome accession: NC_009975 Putative virulence/resistance : Unknown Product : HsdR family type I site-specific deoxyribonuclease Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : - Position : 35335 - 38433 bp Length : 3099 bp Strand : + Note : KEGG: aba:Acid345_3755 type I site-specific deoxyribonuclease, HsdR family; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases DNA sequence : ATGTCTAATTTATGTGAAGATACGATTGAACAGGGGACTCTTGAGCTTTTAGAAAGTATTGGATACGAAATAATTTCTGG TCCTGAAATTGCGCCTGATGGCACTTCTCCAGAACGTAAAGATTATTCTGAAGTTGTACTTGTTTCTCGCCTTAGAAACG CAATTTCAAGAATAAATCCAAATGTTCCAGAGGTTGCGAGGGAAGATGCACTTCGAAAAGTCTTGAGGCTTGAAAATCCA AATTTACTCATGAATAACGAGAAGTTTCACGAATTTATATTTAAGGGAATTGATGTAGAATATCCAATTGATGGAAGAGT TAAGGGAGATAAGGTTTACTTACTCGATAAAGACCCGTTAAAAAACGAATTTGTTGCAGTAAACCAGTTTACAATCATTC AAAATAATAAAAACAGGCGGCCAGATATTGTCATATTTGTAAACGGGCTTCCGCTTTCGGTAATCGAACTTAAAAATCCT ACAAAAGAAGATGCTACAATTTGGAGTGCTTATAACCAGATTCAAACGTATAAATCGGAAATTTCAGAACTTTTTAAGTA TAACGAGCTTATCCTAATTTCTGATGGTACGGAATCGAGAATAGGTACGCTTTCTTCAAATAAAGAGTGGTTTTTACCGT GGAAATCAATTGATGGAACTTCTGAAATTAATAATGGAGTAAGCCAACTAAAGATTTCAATTCTTGGAATGTTTGATAAA ACGCGGTTTATTGACATAATAAAGAATTTTATTGTTTTTAAAAAGGATGGAAAAGACATTATAAAAGTTATTGCTGGATA CCACCAATATTTTGCGGCAAATCGTGCAATTGAAAAAACTATTGAAGCAATTTCTGGAAATCGCCGGTGTGGTGTTGTAT GGCATACGCAAGGGTCTGGAAAAAGTCTTACAATGGCTTTTTATGCTGGAAAACTTGCAATTACTCCAGAACTTAGAAAT CCTACAATCGTAGTTGTAACTGATAGGAATGACCTTGATGACCAGCTCTTTGGAACGTTTGCATCATGTATTGATGTATT AAAACAGACTCCTGTTCAGGCAAAAAATGCAGAAGACTTAAAGGAACAGTTAAAGGTTGTATCGGGTGGAGTAATCTTTA CAACGATGCAGAAGTTTTCTGTTGATGAACTTAATGCAAAATATCCAATGCTTTCTGATCGAGAAAACATAATCGTGATG GCTGATGAAGCACACAGGAGCCAGTACGGACTTAAAGCGAGATCTGTTGAGAAAAACGGTGAAGTTGGTATAACTTATGG TTTTGCTAAATATTTGCGTGATGCGCTACCAAATGCTTCATTTATTGGATTTACAGGAACTCCGATAGACTTTGAAGATA AAAGCACCCGTTCGATATTTGGTGAATATATCGATATTTACGATGTAAGACGGGCTGTTGCTGATGGTAGAACTGTAAAA ATCTACTATGAAAGCCGTGTTGCAAAAATCGGAATTGAAAACGACGTTCTTGCTAAACTTGACGCAGAATTTGAAGAAGT TACAGAATTTGAAGAAAATTATAAAAAAGAGAAATTAAAGGGCAAATGGGCACAGCTTGAAGCGATTGTTGGAAGCAATG ACAGGATTTCAAAAGTTGCACAGGATATTGTCAATCACTTTGAAAAACGGGAAGAAACGCTTAGTGGAAAAGCAATTGTT GTATGCATGAGCAGGAGAATTTGTGTTGACCTTTATGACGAAATTATTCGTTTGCGGCCTGAATGGCATAATGACGATGA CAAACTCGGTGTTTTAAAAGTTATAATGACAGGTTCTGCGGCTGATGGCACGGAATGGCAAAAACATATCCGTTCAAAAG GAAAACGAAAAGAGCTTGCTGAACACTTTAAAAATCCTGAAAGCGAATTTAAAATTGCGATTGTTCGTGATATGTGGCTT ACTGGCTTTGATGTTCCGTGTTTGCATACACTTTACATCGATAAGCCTATGAAAGGGCACGGATTAATGCAGGCGATTGC AAGGGTAAACAGGGTATTTAGAGATAAGCCTGGAGGACTTGTTGTTGACTACATCGGAATTGCACAGGATTTAAAGTATG CGCTTATGAATTACACTTCATCTGGCGGTACTGGGAAACCAACGTATGATATAGAAGATGCAGTAAACCTCATGAAATCA AAATACGAAGCTATGAAAGATTTCTTTTATGGCCATGACTACTCAAAATTCTTTAATGGCACAAATATTGAAAAAATGGA TGTAATTCCAGAAACTTTAGAATTTATCCTCAATCAGCCTGACGGGAAAAAGCGGTTTGTTAAACTTGCGCTTGAACTTA TAAAGTCATACGCTCTATCTCTGCCGCATGAAGAAGCCGTAAAAATCCGTGAGGAAGTCGCGTTCTTTACAGGGGTTAAA GCGGCACTGTATAAAAATACGGAAATTTCAGGAAAACCAGAAGATGAACTAAACAGCGCGATAAAACAGATTGTATCGGG TGCAGTTCGTACTGATGGAATAATCGATGTATTTGGTGAAGCAGGACTTGAAAAACCCGATATTTCGATTCTGTCTGAAC AGTTCCTCGAAGATGTAAAAAACATGAAATATAAAAATTTAGCACTTGAAACGCTTAAAAAAATATTAAATGACGAGATA AGGGCTAAATTTAAAAACAATCTTTTGCAGGAAAAGAAATTTTCAGAGATGATTGAAAACGCGATTAAAAGATACCACAA TAAAGCGATAGATTCGGCGGCAGTTATTCAAGAACTCATAGCAATTGCAAAGGAGATTGAAAACGCTAAAAGAAGAGGGG AAGAATTACATTTAACTGAAGAAGAGCTCGCATTTTACGATGCGTTATCAGACAACGATTCAGCAAAGGAAATTTTAGGA ACAGAGATTTTAACAGAAATTGCACGAGAACTTACCGAAACATTACGGAATAGCGTATCTATTGACTGGGAAGTTAGGGA AACTGTAAGGGCAACTTTAAGAGTTAAAATTAAAAGGTTACTTCGAAAATATGGGTATCCTCCAGACAAACAGCAGATTG CAGCGGACCTTGTTTTAAAACAAGCTGAAACAATTTCTAAAGAATGGATTAAGGCGTAA Protein sequence : MSNLCEDTIEQGTLELLESIGYEIISGPEIAPDGTSPERKDYSEVVLVSRLRNAISRINPNVPEVAREDALRKVLRLENP NLLMNNEKFHEFIFKGIDVEYPIDGRVKGDKVYLLDKDPLKNEFVAVNQFTIIQNNKNRRPDIVIFVNGLPLSVIELKNP TKEDATIWSAYNQIQTYKSEISELFKYNELILISDGTESRIGTLSSNKEWFLPWKSIDGTSEINNGVSQLKISILGMFDK TRFIDIIKNFIVFKKDGKDIIKVIAGYHQYFAANRAIEKTIEAISGNRRCGVVWHTQGSGKSLTMAFYAGKLAITPELRN PTIVVVTDRNDLDDQLFGTFASCIDVLKQTPVQAKNAEDLKEQLKVVSGGVIFTTMQKFSVDELNAKYPMLSDRENIIVM ADEAHRSQYGLKARSVEKNGEVGITYGFAKYLRDALPNASFIGFTGTPIDFEDKSTRSIFGEYIDIYDVRRAVADGRTVK IYYESRVAKIGIENDVLAKLDAEFEEVTEFEENYKKEKLKGKWAQLEAIVGSNDRISKVAQDIVNHFEKREETLSGKAIV VCMSRRICVDLYDEIIRLRPEWHNDDDKLGVLKVIMTGSAADGTEWQKHIRSKGKRKELAEHFKNPESEFKIAIVRDMWL TGFDVPCLHTLYIDKPMKGHGLMQAIARVNRVFRDKPGGLVVDYIGIAQDLKYALMNYTSSGGTGKPTYDIEDAVNLMKS KYEAMKDFFYGHDYSKFFNGTNIEKMDVIPETLEFILNQPDGKKRFVKLALELIKSYALSLPHEEAVKIREEVAFFTGVK AALYKNTEISGKPEDELNSAIKQIVSGAVRTDGIIDVFGEAGLEKPDISILSEQFLEDVKNMKYKNLALETLKKILNDEI RAKFKNNLLQEKKFSEMIENAIKRYHNKAIDSAAVIQELIAIAKEIENAKRRGEELHLTEEELAFYDALSDNDSAKEILG TEILTEIARELTETLRNSVSIDWEVRETVRATLRVKIKRLLRKYGYPPDKQQIAADLVLKQAETISKEWIKA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| api52 | CAF28526.1 | hsdr-like Type I restriction enzyme | Not tested | YAPI | Protein | 0.0 | 48 |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 48 |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 47 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 47 |
