Gene Information

Name : Dshi_4077 (Dshi_4077)
Accession : YP_001542280.1
Strain :
Genome accession: NC_009958
Putative virulence/resistance : Virulence
Product : ABC transporter related
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1134
EC number : -
Position : 10862 - 11521 bp
Length : 660 bp
Strand : +
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pde:Pden_5037 ABC transporter related

DNA sequence : 
ATGATCCGGTTCGAGAACCTCACCAAGCGTTTCGTGGTCAAGGGCTACGTCAAGACGGTGATGGAGAATGTTTCCCTCAC
CATCCCCTCGAAGACCTCCGTGGCGCTTCTGGGGCGCAACGGGGCGGGCAAATCGACCCTTCTGAAGATGATCGCAGGCA
CGGTCGACCCGACCTCGGGGGAGATCCTGTCCAGTGGCACGATCTCCTGGCCCGTCGGCTTCGCCGGCTCGTTCCATCCG
GACATGACCGGCGCTCAGAACACCAAGTTCCTGGCCCGGGTCTATGGCATCGACACCCAAGCCCTGACCGATTTCGTGGA
GGATTTCGCCGAGCTGGGCGACCACTTCCGCCAGCCCTTCCGCAGCTATTCCTCGGGCATGAAATCGCGGCTCGCCTTCG
GTATCTCCATGGGGATCAAGTTCGACACCTACCTGGTCGACGAGGTAACGGCGGTGGGCGATGCGGCCTTCAAGAAGAAG
GCGAGCGCGATGTTTCAGGACCGTATGGCCGATGCCGGCGCGGTCTTCGTGAGCCACTCCATGGGCCATGTGCGCGAGAT
GTGCGATGTGGGCATCGTGATCGAGAACGGGCAGCTGACCTACCATGAAGACATTCACGAGGCCATCGCCCATCACGAAA
GCAACATGAAGTTGCGCTGA

Protein sequence : 
MIRFENLTKRFVVKGYVKTVMENVSLTIPSKTSVALLGRNGAGKSTLLKMIAGTVDPTSGEILSSGTISWPVGFAGSFHP
DMTGAQNTKFLARVYGIDTQALTDFVEDFAELGDHFRQPFRSYSSGMKSRLAFGISMGIKFDTYLVDEVTAVGDAAFKKK
ASAMFQDRMADAGAVFVSHSMGHVREMCDVGIVIENGQLTYHEDIHEAIAHHESNMKLR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsT YP_854396.1 polysialic acid transport ATP-binding protein KpsT Not tested PAI I APEC-O1 Protein 1e-41 49
kpsT CAE85223.1 KpsT protein Virulence PAI V 536 Protein 3e-41 47
ctrD NP_273138.1 capsule polysaccharide export ATP-binding protein CtrD Not tested IHT-A Protein 4e-42 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dshi_4077 YP_001542280.1 ABC transporter related VFG1449 Protein 5e-42 49
Dshi_4077 YP_001542280.1 ABC transporter related VFG0696 Protein 8e-41 43
Dshi_4077 YP_001542280.1 ABC transporter related VFG0258 Protein 1e-42 42