|
Name : Dshi_4082 (Dshi_4082) Accession : YP_001542285.1 Strain : Genome accession: NC_009958 Putative virulence/resistance : Unknown Product : integrase catalytic region Function : - COG functional category : - COG ID : - EC number : - Position : 16978 - 18471 bp Length : 1494 bp Strand : + Note : PFAM: Integrase catalytic region; Transposase-like Mu; KEGG: art:Arth_4385 integrase, catalytic region DNA sequence : TTGATAATCCGGCGTCCGGTCACCGATCCCCTTACGGACAGTCTGACTGCGCTGCCCGAAGACCGACGCGCCGAGGCGTT GCGCCGGTTCAACATACTGCGCCAGCACCTGATCGACGAAGTCCCCCTGACGGAAGTTGCCCGTGTCAGTGGTATCCCAC TGCGCACGCTGCAAAGGTGGACGTCCCGATATCAGCGCTTTGGGCTTGCCGGACTTGCAAGAGCACCGCGATCTGATGCC GGGCAACGGCGGCTATCATCTGAACTGGTCGAGCTGATTGAAGGGCTGGCCTTACACAAACCCCGTCTCTCTACCGCCGC AATCCACCGGCGCATCATCCCGATTGTAAAATCGCGTGACTGGCCTGTCCCTTCTTATGCCACGATACATTCAATCGTGA ATAGTCTTGATCCCGCGCTTGTCACGCTCGCTCATGATGGCGCAGCCGCCTATCGTGACCGGTTCGAAATGATTCATCGT CATCGGGCCGAAAGGCCGAATGCTGTCTGGCAGACAGACCACACACAACTCGATCTAATCATCTTGGATACCAATGGTGC GCCGGTGCGGCCGTGGCTTACCATCGTGCTTGATGATCATTCCCGTGCAGTGGCTGGGTACGCCGTCTTTGTCGGCGCAC CTTCTGCTATCCAGACCGCTCTTGCCCTGCGGCAAGCTATCTGGCGAAAGGATACGCCTTCCTGGCCGATTTGTGGCCTG CCGGATGTTTTATACACCGATCACGGCAGCGACTTCACCAGCAAGCACCTTGAGCAGGTCGCAGCTGACCTGCGCATTGA GCTTGTGTTTTCCACGGTTGGCCGGCCACAGGGGCGTGGCAAGATCGAGCGGTTTTTCGGTACCATCAACACTGAGCTGT TGCCTGAGTTACCGGGGGCTTTGTCGAACGGAAAACCAGCCTCCCCGCCACGCCTGTCGCTCGGCGAGTTGGAGGTTGCC GTAAAGACTTTCGTCACCGCAGTGTACAACGCGCGCAAGCATAGCGAAATCGATGTGCCACCTAATGAGGCTTGGCGGGG TGACGGCTGGCTACCTCGTATGCCGAACAGTCTGGAACAGCTCGATCTGCTACTGGTAATGGCCTTAAAAACCCGGCAGG TCCGCCGTGACGGCATTCGGTTTCAGGGCTTGCTCTACACCGATCCCACACTTGCAGCCTATGTCGGCAAAACGGTCAAC ATCCGCTATGACCCGCGCGACATTACCGAACTGCGCGTGTTCCACCGCGACCGGTTTTTGTGCCGCGCTGTCAGCGCCCA TCATGCGCATCACACAATATCACTCAAGGATATCCAACAGGCCCGCACCGCCAGGCGGAAGGCTTTGCGCAACGAGATCA CGGTAAAATCCAGACAGATCACCGAGTTTCTTCCCAAACCTGCGCCACCTCCAAGTCGTGAAAAGCAAAATCCCGTATCG CCTGACGCCCCGCGCCAAAAGCTGGTCCTGTATAAAACGGACAAGACGCCATGA Protein sequence : MIIRRPVTDPLTDSLTALPEDRRAEALRRFNILRQHLIDEVPLTEVARVSGIPLRTLQRWTSRYQRFGLAGLARAPRSDA GQRRLSSELVELIEGLALHKPRLSTAAIHRRIIPIVKSRDWPVPSYATIHSIVNSLDPALVTLAHDGAAAYRDRFEMIHR HRAERPNAVWQTDHTQLDLIILDTNGAPVRPWLTIVLDDHSRAVAGYAVFVGAPSAIQTALALRQAIWRKDTPSWPICGL PDVLYTDHGSDFTSKHLEQVAADLRIELVFSTVGRPQGRGKIERFFGTINTELLPELPGALSNGKPASPPRLSLGELEVA VKTFVTAVYNARKHSEIDVPPNEAWRGDGWLPRMPNSLEQLDLLLVMALKTRQVRRDGIRFQGLLYTDPTLAAYVGKTVN IRYDPRDITELRVFHRDRFLCRAVSAHHAHHTISLKDIQQARTARRKALRNEITVKSRQITEFLPKPAPPPSREKQNPVS PDAPRQKLVLYKTDKTP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tnp | YP_254523.1 | transposase for Tn552 | Not tested | ¥ðSh2 | Protein | 2e-103 | 45 |
| tnp | YP_253675.1 | transposase for Tn552 | Not tested | ¥ÕSh1 | Protein | 2e-103 | 45 |
