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Name : Dshi_3857 (Dshi_3857) Accession : YP_001542066.1 Strain : Genome accession: NC_009956 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein CapD Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 63834 - 65726 bp Length : 1893 bp Strand : + Note : PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: rsh:Rsph17029_2850 DNA sequence : GTGAATGGATTGGGTTGCAGCGTGCTGAACTTCGTCAAATCCCTGACATTGGGACAGAAGGCGATCACCTTGCTGGTGGT GGACCTGGTGCTGATCCCGCTTGCCCTGATCGTCACCTTCGCCTTGCAGCCGATCCCGGTGTCGCCCGGCGAAACCATTG CGCTCATCCTGCCGATCCTGCCCTACCTGCTGGCCGCCAGTGCGCTCGTCGCCTTCTGGCTGGGCATCCCCTATATCCGG CTAAACGCCTACGAAGCCCGGGCCGTGGGCAAGACCGCCCAATACGCGGCGGCCAACGGGCTGATCGCGCTGGTGCTGAG CAAGATCGCCGGGCTGGGCCTGACCACCGGGCTCTACGTGATCTTTGCAGGCTGTTTCTTCCTGTTCTCCGCCGCCAGCC GGGTGGTGATGCTGCAGATCCTGACCGCGATCTACCGCCGGGACGAAGGGCATACCCGGGTGATGATCTACGGCGCGGGC ACCACCGGCACCCAGCTGGTTTCGGCGCTCAACGCCCACAAGACGATCTACCCGGTGGCCTTCGTCGATGACAACGCCGC GCTGCACGGGCTGACCGTGGCCGGGTTGCCGGTGCATTCGCCGGTGCGCATCCGCGAGCTGGTCCGCGACAAGCAGATCG ACCGGGTGCTGCTGGCGGTGCCGTCGCTGAGCCAGCCGAAACAGGCGCAGCTGGCGCGCCGGTTGCAGAAACTCGGGCTG GAGGTGCAGGCCCTGCCCTCCTTTTCGCAGCTGATCGGCGAAGAGGAACTGGTCGACAAGCTCAAGCCCGTCGAAAGCCA TACCTTCCTCGGCCGACAGCAGGTCTGCACCGAGCTCGAGCGCGGCTGCGAAAGCTATGCGGACCGGGTCGTGCTGATCT CCGGGGCCGGGGGCTCGATCGGGTCGGAATTGTGCCGGCAGGTGCTGGCCTGTCGCCCTGCGAAACTCGTGCTCTACGAG CTCAACGAACTGGCGCTCTACAACGTGGACATGGAGCTGCGCTCCCTGGCGGAGGTGACCGGGACCGAGCTCGTTCCGGT GCTGGGCTCGGTAACCGATCCGCGCCAGGTGCGCGGGGTACTGGCAGAGCACAAGGTGCAGGTGGTCCTGCATGCCGCCG CCTACAAGCATGTCCCCCTGGTGGAGGCGAACCCGCTGGCGGGGCTCGCCAACAACGTCTTCGGCACCCAGACCCTGGCC CGGGAGGCCGCCGAATACGGGATCGAGCGGTTCATCCTGATCTCGTCGGACAAGGCGGTGCGGCCCACCAACGTGATGGG CGCGTCGAAACGGCTGGCCGAGCTGGTGATCCAGGACCTGGAGACCCGGTATACCGGTACGGTCTTCACCATGGTGCGCT TCGGCAATGTGCTGGGCTCGTCAGGCTCGGTCGTGCCGCTCTTCCAGGAGCAGATCCGCCGGGGCGGGCCGGTCACCGTG ACCGACCCCAAGGTGACGCGCTATTTCATGACCGTGCAAGAGGCCGTGCGCCTGGTGCTGACCGCGGGATCCATGGCCCG GGGCGGCGAGGTCTTCGTGCTCGACATGGGGGCCCCGGTGCCGATCGTGCAGCTCGCCCGCCAGGTGATCGAAAGCGCGG GCTACACCGTGCGCGACGATGCCACCCCGGACGGGGATATCGAGATCGTCTTCACCGGGCTGCGGCCGGGCGAGAAGATG TTCGAGGAACTGACCATCACCGACGACCATATCGGCACCCGCCATCCCAAGCTGTTCTGTGCCCGCGAGCAAAGCCTGTC GGAGATCGAGATCGCCGGCATCCTGCGCAGCCTGCGCCAGGCCGTGGCCTCGGGCGATCCGGATGCGGGCCGGGCGGTCA TCACCCGTTGGGTCGAAGGCTACGTGCCCGGGGTCAAAAGCGTGCCGTTGTGA Protein sequence : MNGLGCSVLNFVKSLTLGQKAITLLVVDLVLIPLALIVTFALQPIPVSPGETIALILPILPYLLAASALVAFWLGIPYIR LNAYEARAVGKTAQYAAANGLIALVLSKIAGLGLTTGLYVIFAGCFFLFSAASRVVMLQILTAIYRRDEGHTRVMIYGAG TTGTQLVSALNAHKTIYPVAFVDDNAALHGLTVAGLPVHSPVRIRELVRDKQIDRVLLAVPSLSQPKQAQLARRLQKLGL EVQALPSFSQLIGEEELVDKLKPVESHTFLGRQQVCTELERGCESYADRVVLISGAGGSIGSELCRQVLACRPAKLVLYE LNELALYNVDMELRSLAEVTGTELVPVLGSVTDPRQVRGVLAEHKVQVVLHAAAYKHVPLVEANPLAGLANNVFGTQTLA REAAEYGIERFILISSDKAVRPTNVMGASKRLAELVIQDLETRYTGTVFTMVRFGNVLGSSGSVVPLFQEQIRRGGPVTV TDPKVTRYFMTVQEAVRLVLTAGSMARGGEVFVLDMGAPVPIVQLARQVIESAGYTVRDDATPDGDIEIVFTGLRPGEKM FEELTITDDHIGTRHPKLFCAREQSLSEIEIAGILRSLRQAVASGDPDAGRAVITRWVEGYVPGVKSVPL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 2e-69 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Dshi_3857 | YP_001542066.1 | polysaccharide biosynthesis protein CapD | VFG0029 | Protein | 7e-89 | 48 |
| Dshi_3857 | YP_001542066.1 | polysaccharide biosynthesis protein CapD | VFG1300 | Protein | 1e-70 | 41 |
