Gene Information

Name : Dshi_3739 (Dshi_3739)
Accession : YP_001541950.1
Strain :
Genome accession: NC_009955
Putative virulence/resistance : Unknown
Product : integrase catalytic region
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 145289 - 146146 bp
Length : 858 bp
Strand : +
Note : PFAM: Integrase catalytic region; KEGG: bms:BRA1116 IS3 family element, transposase orfB

DNA sequence :
ATGAGGTTTCGGTTCGTCGAAGAACATCGTGGGGCCTTCCCGATCGACCGGTTGTGTCAGGTTCTGAACGTCAGCACTCG
CGGGTTGCGGGCTTTCCGCAGCCGTCCGGCCAGTCGCCGGCAGCGCATGGATATGGTCGTTTTAGCGCACATCAAGGAGC
AGTCGCGGCTGAGCCTGGGCAGCTATGGCCGCCCACGAATGACCGAGGAACTGAAGGAGGTTGGCGTCGATGTGGGGCAC
CGCCGGGTTGGGCGTTTGATGCGTGCGAACGGGATTACCGTTGAGAGAACACGCAAGTTCAAGGCAACAACCGACAGCGA
TCACACGTTCAACATCGCCCCGAACCTGCTGAATCGCGACTTCAGTGCGGCCGGGCCGAACCAGAAATGGGCAGGCGACA
TCAGCTACATCTGGACCCGCGAGGGCTGGCTGTATCTGTCAGTCATCTTGGACCTGCATTCGCGTCGTGTCATCGGCTGG
GCTGTCAGCAACCGTATGAAGCGTGATCTGGCGATCCGGGCCTTGAAGATGGCCATTGCCTTCAGGTCGCCGCCCAAGGG
CTGCATCTTCCACAGTGATCGCGGCAGCCAATACTGTTCGCATGACTACCAGAAGATCCTGCGCCAGCATGGCTTCAGGG
CCTCCATGAGCGGTAAAGGTAATTGTTATGACAACGCGGCCGTTGAGACATTTTTCAAAACCATCAAGGCCGAGCTGATC
TGGCGGCGGTCATGGGCAACAAGGCGGCAAGCTGAGATGGCAATCTTCGAATACATCAATGGGTTCTACAATCCGCGGCG
GCGGCACTCAGCACTGGGCTGGAAAAGCCCGGTCGCCTTCGAACGGAAAGTGGCCTAA

Protein sequence :
MRFRFVEEHRGAFPIDRLCQVLNVSTRGLRAFRSRPASRRQRMDMVVLAHIKEQSRLSLGSYGRPRMTEELKEVGVDVGH
RRVGRLMRANGITVERTRKFKATTDSDHTFNIAPNLLNRDFSAAGPNQKWAGDISYIWTREGWLYLSVILDLHSRRVIGW
AVSNRMKRDLAIRALKMAIAFRSPPKGCIFHSDRGSQYCSHDYQKILRQHGFRASMSGKGNCYDNAAVETFFKTIKAELI
WRRSWATRRQAEMAIFEYINGFYNPRRRHSALGWKSPVAFERKVA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 4e-95 71
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 4e-95 71
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 4e-95 71
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 2e-48 45
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 3e-48 45
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 4e-48 45
insF CAC43414.1 transposase of insertion element IS3 Not tested PAI III 536 Protein 7e-48 44
unnamed AAF09030.1 unknown Not tested SHI-O Protein 3e-42 44
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 3e-42 44
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 4e-42 44
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 3e-42 44
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 4e-42 44
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 4e-42 44
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 3e-42 44
unnamed AAF09022.1 unknown Not tested SHI-O Protein 3e-42 44
unnamed AAQ07468.1 TnpI-like protein Not tested Not named Protein 3e-42 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dshi_3739 YP_001541950.1 integrase catalytic region VFG1631 Protein 4e-48 44
Dshi_3739 YP_001541950.1 integrase catalytic region VFG1706 Protein 2e-42 44