Gene Information

Name : Dshi_3705 (Dshi_3705)
Accession : YP_001541917.1
Strain :
Genome accession: NC_009955
Putative virulence/resistance : Unknown
Product : integrase catalytic region
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 112171 - 113076 bp
Length : 906 bp
Strand : -
Note : PFAM: Integrase catalytic region; KEGG: pde:Pden_3846 integrase, catalytic region

DNA sequence : 
ATGATCGCCTTCATTGAGGATCAGCGCGTTGTTTACGGTGTCGAGTCGATCTGCAGGGTGCTGCCGATCGCGCCGTCAAC
ATTCTATCACCACCTGGCGTGCCTCGCTGATCCGTCCAAAGCTTCGGCCCGGCATCAGCGGGATACGGAGCTGCGCCCGG
AGATCAAACGTGTCTGGGATGAGAATTATCAGGTCTACGGGGTCCGTAAGGCATGGCATCAGCTGAAGCGCGAGGGCTTT
GAGCTGGCGCGCTGCACGGTGGAGCGGCTGATGAAACATATCGGCATCCGTGGGGCTGTGCGCGGCAAGGTGGTCAAAAC
AACCGTCCCTGACACGTCAGCGCCTTGTCCGCGTGACAAGGTGAACCGCGTGTTCCGGGCACCAGCCCCGAACCTCCTCT
GGGTCAGCGATTTTACCTACGTGTCGACATGGCAGGGCTTTGTCTATGTTGCCTTCGTCATCGACACGTTTGCAGATCGC
ATCGTCGGCTGGCGGGTCTCACGGTCGGCCAAAACAGACTTTGTTCTCGATGCTCTTGAACAGGCCCTGCATGATCGACG
GCCGGTCCAAAAGAGCGGCTTGGTCCACCACTCGGATCGTGGCGGGCAATATTTATCCATTCGCTATACCGAGCGTCTGG
CCGAAGCTGGCATCGAGCCATCGGTCGGCAGCGTCGGGGATTCCTATGACAACGCCCTCGCAGAAACGATCAATGGTCTA
TACAAAACCGAGCTGGTCCATCGTCAAGGACCGTGGCGCAATATGCAGGATCTGGAAATGGCGACACTCGGCTGGGTCGA
TTGGTTCAACAACCGGCGCCTGCTTGGACCCATCGGAAACATCCCGCCAGCAGAGGCTGAAGACAACTTCTATGCATACC
GCGAAGTGCTCGATATGGTCGCGTGA

Protein sequence : 
MIAFIEDQRVVYGVESICRVLPIAPSTFYHHLACLADPSKASARHQRDTELRPEIKRVWDENYQVYGVRKAWHQLKREGF
ELARCTVERLMKHIGIRGAVRGKVVKTTVPDTSAPCPRDKVNRVFRAPAPNLLWVSDFTYVSTWQGFVYVAFVIDTFADR
IVGWRVSRSAKTDFVLDALEQALHDRRPVQKSGLVHHSDRGGQYLSIRYTERLAEAGIEPSVGSVGDSYDNALAETINGL
YKTELVHRQGPWRNMQDLEMATLGWVDWFNNRRLLGPIGNIPPAEAEDNFYAYREVLDMVA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 6e-60 64
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 3e-59 63
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 5e-68 63
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 3e-76 61
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 1e-78 61
Z1198 NP_286733.1 transposase Not tested TAI Protein 3e-77 61
Z1638 NP_287141.1 transposase Not tested TAI Protein 3e-77 61
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 2e-77 61
Z1221 NP_286756.1 transposase Not tested TAI Protein 1e-77 61
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 9e-76 60
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 2e-77 60
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 2e-78 60
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 1e-77 60
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 4e-77 60
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 2e-77 60
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 2e-78 60
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 2e-75 59
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 2e-75 59
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 2e-75 59
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-53 59
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 2e-75 59
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 2e-57 46
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 4e-41 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dshi_3705 YP_001541917.1 integrase catalytic region VFG1602 Protein 1e-75 59