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Name : lysS (Cmaq_1187) Accession : YP_001541004.1 Strain : Caldivirga maquilingensis IC-167 Genome accession: NC_009954 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 1245381 - 1246862 bp Length : 1482 bp Strand : - Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGTATAAGCCTCAATGGGACCCGAATAGGTTAAGGATCGTGGAGGAGTTGAGGAGTAGGGGTGTTAACCCGTATCCACA TAAATTTGAGATTACCCACACGATAAGTCAGATTAGGGAGCTAGCTAAGAAGTACCCTATTAGCCATGATCCATTCCTTA AGGGTATTAGGACGGTGGGTAGGGTGGCTAACGTTAGGAGGCATGGTAAGGCTTCATTCGTTGATATTTTCGATGAGGGT GAGAGGCTTCAACTCTACTTGAGGGTTAATGAGCTTGGGGATAGGTTTGAGGAGTTTCATAGATATGTGGATAGGGGTGA TGTAATTGGGGTTGAGGGTGACTTATTCTACACGCTTAAGGGTGAGTTAACGCTACTGGTTCATGATTACGCATTATTGG CTAAGGCGCTCCTTGAGCCACCTGACTGGAGTAAATACACCACTGAGTGGAGGTATACGCATAGGTACCTTGACTTCCTC TATAATAGTGAGGCTAGGAGGATTATTCAAACCAGGTTCAGGATTATTCAAGCCATTAGGGAGTTCTTGAATTCAATGGG GTTCATGGAGGTTGAAACCCCAATACTTCAACCAGTCTACGGTGGTGCCTTGGCTAAGCCCTTTAAGACTCATGTTAATG CCCTTGATGAGGACTGGTACCTTAGGATTAGCCTTGAACTTTACTTGAAGAGGTTCATAATTGGGGGTTTCAATAAGGTT TACGAGATTGGTAAAGTCTTCAGGAATGAGGACATTGATGTTTACCATAACCCGGAATTCACAATGCTTGAATTATACTG GGCCTACGCGGACTACAATGATATCATGAGGCTTACGGAGGATTTGATTCATCAAGTGGCAGTGAAGGTTACTGGTAAGG ACATGGTGGAGTACCCTATAGGTGAAGGTAAGGTTGAGGTTAAGTTAACTACACCGTTCAGGAGACTAACAATGTATGAG GCCTTAAGTAATGAGCTGGGTAAGAACGTTGAGTCAATGAGTGATGATGAGTTGAGGAGATTAATGAATGAGAATGGGCT GGTACCTAGGGGTGGGCAGTACGTTAGGGGGCTTATGATTGAGAAGCTATTTGATAAATTAGTGGCACCTAAGTTAATTC AACCAACCTTCATTACTGATTACCCACAGGAGACTACACCATTATGTAAGCCACATAGGTCTAAGCCAGGCTTAATAGAG AGGTTTGAATTATACATTGCCGGAATGGAGCTGGCCAACGCCTACACTGAGCTTAATGATCCCCAGCTACAGCACAAGTT CTTCGAGGAGGAGGCTGAACGCTTCAAGGGAGGTGACGAGGAGGCGCATCCCTACGACTACGACTTCGTCCTGGCCCTAA GCTACGGAATGCCACCAACAGGTGGATTAGGCATAGGCATTGATAGGCTAGTAATGGTGCTGACTGGGCAATACTCCATT AAGGAAGTAATACCATTCCCAATGGTAAAACATAATCCTTAA Protein sequence : MYKPQWDPNRLRIVEELRSRGVNPYPHKFEITHTISQIRELAKKYPISHDPFLKGIRTVGRVANVRRHGKASFVDIFDEG ERLQLYLRVNELGDRFEEFHRYVDRGDVIGVEGDLFYTLKGELTLLVHDYALLAKALLEPPDWSKYTTEWRYTHRYLDFL YNSEARRIIQTRFRIIQAIREFLNSMGFMEVETPILQPVYGGALAKPFKTHVNALDEDWYLRISLELYLKRFIIGGFNKV YEIGKVFRNEDIDVYHNPEFTMLELYWAYADYNDIMRLTEDLIHQVAVKVTGKDMVEYPIGEGKVEVKLTTPFRRLTMYE ALSNELGKNVESMSDDELRRLMNENGLVPRGGQYVRGLMIEKLFDKLVAPKLIQPTFITDYPQETTPLCKPHRSKPGLIE RFELYIAGMELANAYTELNDPQLQHKFFEEEAERFKGGDEEAHPYDYDFVLALSYGMPPTGGLGIGIDRLVMVLTGQYSI KEVIPFPMVKHNP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 2e-73 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_001541004.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 1e-73 | 41 |
