Gene Information

Name : Sare_2087 (Sare_2087)
Accession : YP_001536943.1
Strain : Salinispora arenicola CNS-205
Genome accession: NC_009953
Putative virulence/resistance : Virulence
Product : sphingomyelin phosphodiesterase
Function : -
COG functional category : R : General function prediction only
COG ID : COG3568
EC number : 3.1.4.12
Position : 2401345 - 2402301 bp
Length : 957 bp
Strand : -
Note : PFAM: Endonuclease/exonuclease/phosphatase; KEGG: stp:Strop_2045 sphingomyelin phosphodiesterase

DNA sequence : 
ATGAAGAGACTGCAGGGTCTGCTACTCGCCGTCGTTCTCGCCGCGACTGGACTAGTCGCCTCCACCGGGGCCGCCCAGGC
TGCACCGGCGCCACTGAAGGTACTGACACACAACGTGATGCTTCTGCCACAGTCGCTCTACCCCAACTGGGGTCAGGTCA
CGCGGTCCGACCTTATTTCCGAGGCCGACTACATCACCGGCCGAGACATCGTTGTTCTCCAAGAAATGTTCGACAACGAG
GCATCCAACCGACTCAAGGATCGTCTCGCCGCCCAGTACCCCTATCAGACACCTGTCCTCGGCCGGTCGCGGTCCGGCTG
GGATGCCACGATGGGGGCGTACTCCAACGTGACCCCGGAGGATGGCGGGGTCACGATCCTGAGTAAGTGGCCGATCCTGG
AAAAAATCCAATACGTCTATGCCGATGGCTGCGGTGCCGACTGGTTTTCCAACAAGGGATTCGTCTACGCCCGCCTCGAT
GTCAACGGAGCCCCCTTACACGTGGTGGGTACGCACGCTCAGGCAGCCGACACTGGCTGCGCCGACGGCACCGGCGCCGG
AGTCCGGGCAGCGCAGTTCGACGAACTCCGCGCCTTCCTTGACGCCCGCCTCATTCCAACAGGTGAACAGGTCATCATCA
CCGGCGACCTGAATGTTGACCGCTACTCCGCCGAATACGCAGGCATGTTGACCCGGCTCGACGTCAGCGACACCTCGTTC
ACCGGCCACCCGTACTCCTGGGACTCTGCGCGCAACGCCATGGCCGACTACAACGACGACCGGAACAGCCGTCAACAGTT
GGACTACGTGATGCAGCGCAACGGCCATGCCCGACATGGCTCAGGTGATAACCAGACCCTGGCTGTCAATGCACCGAAGT
GGTGTGTGACCAGCTGGTTCGTTCGCTACTGCTACACCGACTACGCCGACCACTATCCGGTCGCGGCAAACGTCTGA

Protein sequence : 
MKRLQGLLLAVVLAATGLVASTGAAQAAPAPLKVLTHNVMLLPQSLYPNWGQVTRSDLISEADYITGRDIVVLQEMFDNE
ASNRLKDRLAAQYPYQTPVLGRSRSGWDATMGAYSNVTPEDGGVTILSKWPILEKIQYVYADGCGADWFSNKGFVYARLD
VNGAPLHVVGTHAQAADTGCADGTGAGVRAAQFDELRAFLDARLIPTGEQVIITGDLNVDRYSAEYAGMLTRLDVSDTSF
TGHPYSWDSARNAMADYNDDRNSRQQLDYVMQRNGHARHGSGDNQTLAVNAPKWCVTSWFVRYCYTDYADHYPVAANV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAA70683.2 sphingomyelinase-c Virulence LIPI-2 Protein 1e-59 46
hlb NP_646757.1 truncated beta-hemplysin Not tested ¥ÕSa3 Protein 2e-55 45
hlb NP_375112.1 hypothetical protein Not tested ¥ÕSa3 Protein 2e-55 45
truncated-hlb NP_372527.1 hypothetical protein Not tested ¥ÕSa3 Protein 2e-55 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sare_2087 YP_001536943.1 sphingomyelin phosphodiesterase VFG0674 Protein 7e-60 46
Sare_2087 YP_001536943.1 sphingomyelin phosphodiesterase VFG1798 Protein 7e-60 45