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Name : mutS (Dshi_3466) Accession : YP_001534800.1 Strain : Dinoroseobacter shibae DFL 12 Genome accession: NC_009952 Putative virulence/resistance : Virulence Product : DNA mismatch repair protein MutS Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0249 EC number : - Position : 3646135 - 3648768 bp Length : 2634 bp Strand : - Note : This protein performs the mismatch recognition step during the DNA repair process DNA sequence : GTGAGCAGCAAGACCGTGACGCCGATGATGGCGCAGTACCTGGAGATCAAGCAGGATCATGCGGATGCCCTGCTTTTCTA CCGGATGGGCGACTTCTACGAGATGTTCTTCGACGACGCGGTGGAGGCCGCGGCGGCACTGGACATCGCGCTTACCAAGC GTGGCAAGCATGACGATGCGGACATTCCCATGTGCGGCGTGCCCGTGCATGCGGCGGAGGGTTATTTGCTCACACTGATC CGCAAGGGGTTTCGCGTCGCCGTCTGCGAACAGATGGAGGATCCGGCCGAAGCGAAAAAGCGCGGCTCCAAGTCCGTCGT GCGGCGGGAGGTCGTTCGGCTTGTGACCCCGGGCACCCTGACCGAGGCGAGCCTGCTGGAGGCGCGGCGGCACAATTATC TGGCTGCCTTTGCCAAGGTGAGAGACGACTCCGCGCTGGCTTGGGTCGATATCTCCACTGGCGAGTTCCGGGTCATGGCC TGCCCCGCGGCCCGGCTGTCGGTGGACCTTGCGCGCCTCGCGCCGCGCGAGGTCTTGCTGGCCGAGGGCAACGACCTGCG GTCGCTCGTCGAAGAACACGAGGCGGCGGCGACGGAGCTTGGGCGCGCCAGTTTCGACAGTACGGCCGCGGTGGACCGGC TGTGCCGGCTTTACGGCGTTGCCGACCTCGAGGCTTTTGGGAGTTTCGAACGCGCGGACCTATCCGCGATGGGTGCAATC GTCGGCTATCTGGAGTTGACCCAAAAGGGCAAGCTGCCGCTACTGCGCAAACCGGTGAAGGAACGGGCGCAGCATGGTTT GCAGATCGACGCGGCGACTCGGCGAAATCTGGAGTTGACGCAATCACTGTCTGGGGGGCGGGAAGGTGCGCTGTTGACTG TGATCGACCGCACCGTCACGGCACAAGGCGCAAGGCTCCTGGCGCGGCGACTGGCGAGCCCCTCTGCCGATCTGTCGATC ATCCGGACACGGCACGAGGGTGTCCGCTATGCGCTCGAGGCGCCCGAGATCCTCGACACCGTGCGCACCGCACTGCGGCA GGTGCCGGATATGGATCGGGCACTGTCCCGGTTGGCGCTCGACCGCGGCGGGCCACGGGATCTGGCGGCGATCCGAAACG GTCTCGCCCAGGCCGCAACGCTCGCCGAGGCTCTGCCGGACGACGCCTTGCCCCCCCTCTGGGCCCAATCGAAGAGCCGG TTTTTCGGACATGACGCCCTGCGCGACCTGTTGGAGAAAGCCCTGATTGCCGAACCCCCGCTGCTAACGCGAGATGGTGG GTTCGTTGCCTCTGGCTACAATGTCGACCTGGATGAAGCCCGGCAGCTGCGCGACGAGGGGCGCGGCGTGATTGCCGGAA TGCAGGCGGAATATGCCGAGGCAACCGGGATCGCCTCCCTCAAGGTGAAGCACAACAACGTGCTGGGCTATTTCATTGAA ACGACCGCCACCCACGCGGACAAGATGCTGTCCCCGCCCCTGTCGGACCGGTTCATCCACCGCCAGACCACCGCCAACGC CGTGCGCTTCACCACCGTGGAGTTGTCCGAGATGGAGACCCGCATTCTCAATGCCGGTGGCCGGGCGCTGGCGCTGGAAA AGTCGATCTTCGAAGAGTTGCGTCAGGCCGTGATCGTTGCGGCCGCCGAGCTGTCGGATTGCGCGCGGGCATTGGCGGAA CTGGATGTGGTGACGGCCCTTGCGGTGCTGGCCCGCGACGAGGACTGGTGCGCGCCCAAGGTCGATGACAGCCGTGCCTT CGAAATCAGCGGCGGACGGCACCCGGTAGTCGAGGCCGCGCTGCGCGCCAGTGGTACACCCTTCATCCGCAACGATTGCG ACTTGAGCGAAGGTGCTGCGCCGATCTGGTTGCTCACCGGGCCGAACATGGCGGGCAAATCGACCTTCCTGCGCCAGAAC GCCCTGATCGCGATCCTAGCGCAGATGGGCAGCTACGTGCCCGCAACCGCGGCACGGATCGGGTTGGTCGCACAGGTTTT CTCCCGTGTTGGTGCGTCGGATGATTTGGCGCGGGGGCGCTCGACCTTCATGGTGGAAATGGTGGAAACCGCCGCGATTC TGAACCAGGCCGGGGACCGAGCATTGGTCATCCTTGACGAGATCGGGCGCGGAACGGCCACCTATGACGGGCTGTCGATT GCCTGGGCGACGCTCGAACACCTGCACGGGGTGAACCGGTGTCGCGCCCTGTTCGCCACCCATTACCACGAAATGACCGG CCTTGCTGCGCAACTGTCCGGCGTGGAAAACGCCACCGTGGCGGTCAAGGAGCATGATGGCGACGTGATCTTTCTGCACG AGGTGCGGCGCGGTGCGGCGGATCGATCCTACGGTGTGCAGGTCGCCAAGCTCGCGGGCCTGCCGCCTTCGGTCGTGGCC CGTGCGCGCGAAGTGCTGAAGACGCTCGAATCCGGTGAACGCAGCGGCGGAAACCCGGCAAAGGCGCTGTTGGAGGATCT GCCGCTATTCGCCAACGCTGCCCCTCCGCCACCGCCAGCGGCCCCGACATCGGCATTGGAGGCGCGTCTTGCCGACATAT CCCCGGATGCGCTGAGCCCGCGCGAGGCATTGGACTTGGTCTATGAGTTGAAAAGCCTCGCGGATCGCGACTGA Protein sequence : MSSKTVTPMMAQYLEIKQDHADALLFYRMGDFYEMFFDDAVEAAAALDIALTKRGKHDDADIPMCGVPVHAAEGYLLTLI RKGFRVAVCEQMEDPAEAKKRGSKSVVRREVVRLVTPGTLTEASLLEARRHNYLAAFAKVRDDSALAWVDISTGEFRVMA CPAARLSVDLARLAPREVLLAEGNDLRSLVEEHEAAATELGRASFDSTAAVDRLCRLYGVADLEAFGSFERADLSAMGAI VGYLELTQKGKLPLLRKPVKERAQHGLQIDAATRRNLELTQSLSGGREGALLTVIDRTVTAQGARLLARRLASPSADLSI IRTRHEGVRYALEAPEILDTVRTALRQVPDMDRALSRLALDRGGPRDLAAIRNGLAQAATLAEALPDDALPPLWAQSKSR FFGHDALRDLLEKALIAEPPLLTRDGGFVASGYNVDLDEARQLRDEGRGVIAGMQAEYAEATGIASLKVKHNNVLGYFIE TTATHADKMLSPPLSDRFIHRQTTANAVRFTTVELSEMETRILNAGGRALALEKSIFEELRQAVIVAAAELSDCARALAE LDVVTALAVLARDEDWCAPKVDDSRAFEISGGRHPVVEAALRASGTPFIRNDCDLSEGAAPIWLLTGPNMAGKSTFLRQN ALIAILAQMGSYVPATAARIGLVAQVFSRVGASDDLARGRSTFMVEMVETAAILNQAGDRALVILDEIGRGTATYDGLSI AWATLEHLHGVNRCRALFATHYHEMTGLAAQLSGVENATVAVKEHDGDVIFLHEVRRGAADRSYGVQVAKLAGLPPSVVA RAREVLKTLESGERSGGNPAKALLEDLPLFANAAPPPPPAAPTSALEARLADISPDALSPREALDLVYELKSLADRD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| mutS | AAA80578.1 | DNA mismatch repair protein | Virulence | SPI-1 | Protein | 1e-126 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| mutS | YP_001534800.1 | DNA mismatch repair protein MutS | VFG0562 | Protein | 4e-144 | 44 |
