Gene Information

Name : Dshi_3357 (Dshi_3357)
Accession : YP_001534691.1
Strain : Dinoroseobacter shibae DFL 12
Genome accession: NC_009952
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 3530385 - 3531194 bp
Length : 810 bp
Strand : +
Note : PFAM: Integrase catalytic region KEGG: bbt:BBta_7691 integrase, catalytic domain

DNA sequence : 
GTGGCACACGTTGTGGAAGTCCACGGAGTGAGCCAGCGACGGGCGGGCAAGGCACTGGCCGTGGATCGGTCGAGCGTGCG
CTATCGCAGCGTGCGGCCTGACGATGCCGAAGCGAGGGCCGCCATGAAGGCTGTCGCGGCCGAGAGGCGGCGGTTTGGCT
ATCGCCGCATCCACGTGATGCTGGAACGGCAGGGGATCATGATGAACCTGAAGAAGCTCAGGCGGCTCTATCGCGAGGAG
AAGCTCCAAGTGCGCCGCCGGGGCGGCCGAAAGCGGGCTCTGGGGACACGCTGGCCGATGCTGGTGCCAGATGCCCCCAA
CCAGCACTGGAGCCTGGACTTCGTCAGCGATGCGCTGACGGATGGCAGACGGTTCCGCGTTCTGGCCGTGGTCGACGACT
ACAGCCGGGAGTGCCTGGCCTTGGTGGCGGACACGTCGCTCTCTGGCCTGCGCGTCGTGCGCGAGCTCGATGCGTTGATG
TTGCGCCGCGGCCAGCCTGCAATGGTGGTTTCGGACAATGGAACGGAACTGACCTCGGTGGCTGTCCTGAGCTGGTGCCA
GCGCACGGGCATCGAATGGCACTACATCGCGCCAGGAAAGCCCATGCAGAATGGCTTCGTCGAAAGCTTCAACGGACGCT
TCCGGGACGAGCTTCTCAACGAGTCGCTATTCTCGTCTCTGGCCGATGCCCGCGAGCAGATCCGGGCATGGCAGCACGAC
TACAACCACCATCGCCCTCACTCAGGACTGGGGAACATTCCGCCCGTCGAGTTCGTGGCAAAGAAGGGGCTGGAAATGCG
CGCCGCGTAG

Protein sequence : 
MAHVVEVHGVSQRRAGKALAVDRSSVRYRSVRPDDAEARAAMKAVAAERRRFGYRRIHVMLERQGIMMNLKKLRRLYREE
KLQVRRRGGRKRALGTRWPMLVPDAPNQHWSLDFVSDALTDGRRFRVLAVVDDYSRECLALVADTSLSGLRVVRELDALM
LRRGQPAMVVSDNGTELTSVAVLSWCQRTGIEWHYIAPGKPMQNGFVESFNGRFRDELLNESLFSSLADAREQIRAWQHD
YNHHRPHSGLGNIPPVEFVAKKGLEMRAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed ABR13540.1 insertion sequence IS407 OrfB Not tested PAGI-8 Protein 2e-44 50
unnamed ABR13352.1 insertion sequence IS407 OrfB Not tested PAGI-5 Protein 5e-38 48
EXB25 ABD94712.1 hypothetical protein Not tested ExoU island B Protein 6e-28 45
trp1400B CAB46580.1 IS1400 transposase B Not tested HPI Protein 2e-37 43