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Name : gabD (Dshi_2887) Accession : YP_001534221.1 Strain : Dinoroseobacter shibae DFL 12 Genome accession: NC_009952 Putative virulence/resistance : Unknown Product : NADP(+) dependentsuccinate-semialdehyde dehydrogenase Function : - COG functional category : C : Energy production and conversion COG ID : COG1012 EC number : 1.2.1.16 Position : 3043208 - 3044686 bp Length : 1479 bp Strand : - Note : TIGRFAM: TIGR01780 succinic semialdehyde dehydrogenase; COG: COG1012 - NAD-dependent aldehyde dehydrogenases; PFAM: PF00171; PROSITE: PS00070, PS00687 DNA sequence : ATGCTCGATACAGTGACGGAATTGCGGGAACACCTGAAGGATCCCGCGCTCCTGGCCAGCAAGGCCTATTTCGCGGGTGC CTGGACGGATGCGGACAGTGGCGCGACCTTCCCGGTGACCAACCCGGCGCGCGGCGACGTGATCGCCCATGTGCCCGACC TGGGCCGGGCCGAGACCGCCCGCGCCATCGCCGCCGCAGACGCCGCGCAGAAGCCCTGGGCCGCGCGCACCGCCAAGGAC CGCGCGCAGGTGTTGCGGCGCTGGTTCGACCTGATCGTCGGGAATGCCGACGACCTGGCGCGGATCCTGACCGCCGAGAT GGGCAAGCCGCTGGCCGAAGCCAGGGGCGAGGTGATGTATGGCGCGTCTTTCGTGGAATGGTTCGCCGAAGAGGCCAAGC GCCTCTATGGCGAGACCATCCCGGGTCATTTGCCGGACGCGCGCATCCAGGTGATCCGCCAGCCCATTGGCGTGGTGGGG GCGATCACCCCGTGGAACTTCCCCATTGCCATGATCACCCGCAAGGCCGCGCCGGCGCTGGCGGCCGGCTGCGCCTTCCT GTCGAAACCGGCCGAGGACACGCCGCTCTCGGCGCTGGCGCTGGCGGTTCTGGCCGAACGGGCGGGGATCCCTGCAGGGC TCTTCGCCGTGCTGCCGAGCAGTGATTCCTCGGCCATTGGCAAGGAATTCTGCGAGAACCATACCGTGCGCAAGCTGACC TTCACCGGCTCGACCCAGGTGGGGCGCATCCTGCTGGCGCAAGCCGCCGATCAGGTGAAGAAATGCTCGATGGAGCTGGG CGGCAACGCGCCCTTCATCGTGTTCGACGATGCCGATCTCGACAAGGCGGTCGAGGGGGCGATGGCCTGCAAGTTCCGCA ACGCGGGCCAGACCTGCGTCTGCGCCAACCGGATCTATGTGCAGGACGGGGTCTATGACGCCTTCGCCGAGAAGCTGGCC GCCGCGGTGGAGGAGCTGAAGGTCGGGGATGGCGCGGCCGAGGGTGTGACCATCGGCCCGCTGATCAATATGCCCGCGGT GGAGAAGGTGCAGGATCACCTCGACGACCTGCGCGCCAAGGGTGGAACGGTCGTGACCGGGGGCGAGACACATCCCCTCG GCGGCACGTTCTTCACCCCCACGGTGGTGACCGGCGTGACGCAGGAGATGAAAGTGGCGCGGGAGGAAACCTTCGGCCCG GTCGCGCCGCTCTTCCGGTTCACGGAGGAGGACGAGGTCATCGCCATGGCCAATGACACGATCTTCGGGCTCGCGGGGTA TTTCTACGCCCGCGACATCGGCCGGATCACCCGGGTGTCCGAGGCGCTGGAATACGGCATCGTCGGGATCAACACCGGCA TCATCTCGACCGAAGGGGCGCCCTTCGGCGGGGTCAAGCAATCGGGGCTTGGGCGCGAAGGGTCCCGCCACGGGATCGAC GAGTATCTCGAGATGAAATACATCTGCCTGTCGATCTGA Protein sequence : MLDTVTELREHLKDPALLASKAYFAGAWTDADSGATFPVTNPARGDVIAHVPDLGRAETARAIAAADAAQKPWAARTAKD RAQVLRRWFDLIVGNADDLARILTAEMGKPLAEARGEVMYGASFVEWFAEEAKRLYGETIPGHLPDARIQVIRQPIGVVG AITPWNFPIAMITRKAAPALAAGCAFLSKPAEDTPLSALALAVLAERAGIPAGLFAVLPSSDSSAIGKEFCENHTVRKLT FTGSTQVGRILLAQAADQVKKCSMELGGNAPFIVFDDADLDKAVEGAMACKFRNAGQTCVCANRIYVQDGVYDAFAEKLA AAVEELKVGDGAAEGVTIGPLINMPAVEKVQDHLDDLRAKGGTVVTGGETHPLGGTFFTPTVVTGVTQEMKVAREETFGP VAPLFRFTEEDEVIAMANDTIFGLAGYFYARDIGRITRVSEALEYGIVGINTGIISTEGAPFGGVKQSGLGREGSRHGID EYLEMKYICLSI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| orf17 | AAO17183.1 | Orf17 | Not tested | tcd island | Protein | 2e-124 | 63 |
| cur_1509 | YP_001800903.1 | NAD-dependent aldehyde dehydrogenase | Not tested | Not named | Protein | 4e-70 | 42 |
