|
Name : Dshi_2753 (Dshi_2753) Accession : YP_001534087.1 Strain : Dinoroseobacter shibae DFL 12 Genome accession: NC_009952 Putative virulence/resistance : Virulence Product : TRAP dicarboxylate transporter Function : - COG functional category : G : Carbohydrate transport and metabolism COG ID : COG1593 EC number : - Position : 2914929 - 2916218 bp Length : 1290 bp Strand : - Note : Swiss-Prot: P44543-Sialic acid TRAP transporter permease protein TIGRFAM: TRAP dicarboxylate transporter, DctM subunit PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; colocated with DctQ & DctP subunit; DctM subuni DNA sequence : ATGCTGATCTGGTTCCTGCCGCTGTTCCTGCTGTTCCTGATGATCGGCTTGCCGGTCTTTTTCGGCCTGCTTGCAGCCCC CGGTCTGCTGCTGTGGCTGAACGGGCAGGAGCGGGACATCACCCTGCTTTATCGGAATGTCTATAACGGGATGGACAGCT TTCCGCTGATGGCGATCCCGTTCTTCATGCTGGCAGGCGAGTTGATGAACCGGGGCGGGATCACGTTGCGGCTGGTGGAG TTTGCCCAGGCCCTGATGGGGCATTTCCGGGGCGGACTGGCCCATGTGAACATCCTCAGCTCGATGCTGTTCGCGGGGCT CTCGGGCTCTGCGGTGGCGGACACCTCGGCGCTGGGCTCGATGTTGATCCCGGCGATGGAGAAGCAGGGCTATACCCGCC GGTTTGCCGCCGCGATCACCGCCGCAAGCTCGGTGATTGGGCCGATCATCCCGCCCTCGGGGATCATGATCATCTATGCC TATGTGATGGGGGAGAGCGTCGCGGCCCTGTTTTTGGCAGGGATCGTGCCCGGTATCCTCGTGGGTGTCGGCCTGATGGG GGTCGTGAAACTGATGGCGGACAAGTACGACTTCCCCGTCGCATCGGCCAAGACAACCTGGGGCCAGCGGGGGCAGGCCA GCCTGAAGGCGTTCTTCCCGCTGATGACGCCGGTGATCATCCTGGGCGGTATCCTCGCGGGGGTGTTCACCCCGACCGAG GCTGCGGCGGTGGCGGTGGCCTATGCGCTGATCATCGGGTTCTTCGTGATGCGGACGCTGAAGGTCTCGGACCTGCCGGA TATCCTGGGTCGCGCCGGGATCACGTCGGCGGTGGTGCTGCTCCTGGTGGGGGCGGCGATGGCGTTCAAGACGGTGGTGA GCCTGTCCTACGCGCCGCAGATCATGGCGGATTTCATGCTGAGCCTGTCGGAGAACCCGCTGATCCTGCTGTTGCTGATC AACCTGTTGCTGTTCGTGGTGGGAATGTTCCTCGATGCGGGGCCGGCGATCATCATCCTCGGCCCGATCCTCGGCCCGAT CTTCGTCGATCTGGGGGTCGATCCGATCCATTTCGCAATCATCATGTCCGTGAACCTGACCGTGGGGCTGGCCACGCCGC CCATGGGGCTTGTCCTGTTCGTGGCAAGCTCGGTCTCGGGCGAACGGGTCGAGCGCATCGCCAAGGCGATCCTGCCCTTC CTGGCGGTGGAGATCCTGGTGATCTTCCTGATCACCTATTTCCCCGCGATTTCCATGACCATTCCGCGGCTCACCGGCTT TGCGCAGTGA Protein sequence : MLIWFLPLFLLFLMIGLPVFFGLLAAPGLLLWLNGQERDITLLYRNVYNGMDSFPLMAIPFFMLAGELMNRGGITLRLVE FAQALMGHFRGGLAHVNILSSMLFAGLSGSAVADTSALGSMLIPAMEKQGYTRRFAAAITAASSVIGPIIPPSGIMIIYA YVMGESVAALFLAGIVPGILVGVGLMGVVKLMADKYDFPVASAKTTWGQRGQASLKAFFPLMTPVIILGGILAGVFTPTE AAAVAVAYALIIGFFVMRTLKVSDLPDILGRAGITSAVVLLLVGAAMAFKTVVSLSYAPQIMADFMLSLSENPLILLLLI NLLLFVVGMFLDAGPAIIILGPILGPIFVDLGVDPIHFAIIMSVNLTVGLATPPMGLVLFVASSVSGERVERIAKAILPF LAVEILVIFLITYFPAISMTIPRLTGFAQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| VC1777 | NP_231412.1 | hypothetical protein | Not tested | VPI-2 | Protein | 6e-38 | 42 |
| VC0395_A1375 | YP_001217318.1 | hypothetical protein | Not tested | VPI-2 | Protein | 6e-38 | 42 |
| VPI2_0025c | ACA01842.1 | TRAP dicarboxylate transporter DctM subunit | Not tested | VPI-2 | Protein | 4e-38 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Dshi_2753 | YP_001534087.1 | TRAP dicarboxylate transporter | VFG1110 | Protein | 2e-38 | 42 |
