Gene Information

Name : Dshi_2104 (Dshi_2104)
Accession : YP_001533442.1
Strain : Dinoroseobacter shibae DFL 12
Genome accession: NC_009952
Putative virulence/resistance : Unknown
Product : putative integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 2229916 - 2230737 bp
Length : 822 bp
Strand : +
Note : COG: COG2801 - Transposase and inactivated derivatives; PFAM: PF00665; PROSITE: PS50994; SUPERFAMILY: SSF53098

DNA sequence :
GTGGACTGGGCCATGAAGACAAAAGGCTACAATCAGCGCCGGGCGTGCGCGCTGGCGGGGATCGATCCGCGTGTGTATCG
GCGTCGGTCGAAGCGCCTTGCCGACACGGAACTGCGGGTGAGGATGAAAGAACTGGCGTCCGAGCGGCGTCGGTTCGGTT
ATCGCCGCCTGCACATGCTGCTGAAGCGTGAGGGCTGGGAGGTAAACTGGAAGAAACTGTACCGGCTCTACCGCGACGAA
GGGTTAACCGTTCGTAAACGGGGCGGACGCAAGCGCGCAGTGGGCACCAGGACGCCCATGGCGATCCCGCAGGGGCCAAA
CCAGAGGTGGTCCCTCGACTTCATGTCGGATGCGCTGGAAGACGGGCGTCGGTTCAGGGTGCTAAACGTGATTGATGACT
TTAGCCGGGAATGTCTGGCCGCTGTGGTCGATACATCCATCAGCGGCGCACGTGTCGCCCGCGAGTTGGATCGGATCGCC
GAGCTGCGTGGGTACCCCTGCCTTGTGGTCAGCGACAATGGAACCGAACTGACAAGCAACGCGATGCTGAAATGGCAGGA
AGACCGTAAAGTCGACTGGCACTACATCGCGCCCGGAAAGCCCATGCAGAATGGCCTCGTCGAAAGCTTCAACGGGAGGA
TGCGAGAGGAATGCCTGAACGAACACCTGTTCCCGTCACTGCGCCATGCCTGCCGCATGATTGCGGCATGGCGCGACGAC
TACAACCACCACCGCCCGCACTCGAGTCTCGACGGGCTCACCCCGCGGGAGTATCACCAACGGTCAAGAGAGGACCAAAC
CCTGAACAGAGCTAACCTATAA

Protein sequence :
MDWAMKTKGYNQRRACALAGIDPRVYRRRSKRLADTELRVRMKELASERRRFGYRRLHMLLKREGWEVNWKKLYRLYRDE
GLTVRKRGGRKRAVGTRTPMAIPQGPNQRWSLDFMSDALEDGRRFRVLNVIDDFSRECLAAVVDTSISGARVARELDRIA
ELRGYPCLVVSDNGTELTSNAMLKWQEDRKVDWHYIAPGKPMQNGLVESFNGRMREECLNEHLFPSLRHACRMIAAWRDD
YNHHRPHSSLDGLTPREYHQRSREDQTLNRANL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed ABR13540.1 insertion sequence IS407 OrfB Not tested PAGI-8 Protein 9e-55 49
unnamed ABR13352.1 insertion sequence IS407 OrfB Not tested PAGI-5 Protein 4e-40 48
EXB25 ABD94712.1 hypothetical protein Not tested ExoU island B Protein 4e-31 45
trp1400B CAB46580.1 IS1400 transposase B Not tested HPI Protein 2e-37 43
XCV0439 YP_362170.1 ISRSO12 transposase (fragment) Not tested Hrp PAI Protein 2e-37 41