Gene Information

Name : Dshi_1659 (Dshi_1659)
Accession : YP_001533002.1
Strain : Dinoroseobacter shibae DFL 12
Genome accession: NC_009952
Putative virulence/resistance : Virulence
Product : metal ABC transporter substrate-binding lipoprotein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 1724839 - 1725729 bp
Length : 891 bp
Strand : -
Note : SWISSPROT Q57449: Uncharacterized periplasmic iron-binding protein HI0362, P31304: Manganese ABC transporter substrate-binding lipoprotein [Precursor]; COG: COG0803 - ABC-type metal ion transport system, periplasmic component/surface adhesin; PFAM: PF0129

DNA sequence : 
ATGCGTTTGCTATCTGGAGTGACCCTTGCCGCCGCTCTTGCCCTGCCGTCCCTCGCGCATGCGGAGAAGTTGAAGGCCGT
GACCACCTTCACAGTGATCGCTGACATGGCACAGAACGTGGCCGGCGACGCGGCAGAGGTCGTGTCCATCACCAAGCCGG
GGGCGGAGATCCACGGCTACCAGCCGACGCCGCGGGACCTTCTGAAGGCTCAGGACGCGGACCTGATCCTGTGGAACGGG
CTGAACCTGGAGCTTTGGTTCGAGCAGTTCTTGTCGAACCTGCGCGACGTGCCTGCCGTGACGCTGACCGACGGGATCGA
TCCGGTCTCCATCGGGTCGGGCAGTTACGAGGGCAAGCCGAACCCGCATGCGTGGATGTCGCTCGATAACGCGCTTGTCT
ATGTCGACAATATCGCAGCGGCCTTCGCCGAGCACGATCCGGACAACGCCGAGACCTATCTTGCGAATGCCGAGGCCTAC
AAGGCCGAGATCACCGCGACCATCGCCCCGCTGCGTGAGATGGTGCAGGCGGTGCCCGCCAGCCAGCGCTGGCTAGTGTC
GTGCGAAGGGGCGTTCAGCTATCTCGCCCGTGATTTCGGGATGCAGGAGCTCTATCTCTGGCCCATGAACGCGGATCAGA
CAGGCACACCCCAGCAAGTTCGCAAGGTCATCGACGGCGTGCGCGCCAACGAGATCCCGGTGGTTTTCTGTGAGAGCACC
GTGAACAACGACCCGGCCGAGCAGGTTGCCCGCGAAACCGGGGCGCGGTTTGGCGGTGTGCTCTACGTGGATAGCCTGAC
GGGGCCCGATGGCCCGGTGCCCACATATCTCGATCTGCTGCGAGTCACCTCCGAGACCGTTGCCGAAGGTCTCACAACCC
CTCTCAACTGA

Protein sequence : 
MRLLSGVTLAAALALPSLAHAEKLKAVTTFTVIADMAQNVAGDAAEVVSITKPGAEIHGYQPTPRDLLKAQDADLILWNG
LNLELWFEQFLSNLRDVPAVTLTDGIDPVSIGSGSYEGKPNPHAWMSLDNALVYVDNIAAAFAEHDPDNAETYLANAEAY
KAEITATIAPLREMVQAVPASQRWLVSCEGAFSYLARDFGMQELYLWPMNADQTGTPQQVRKVIDGVRANEIPVVFCEST
VNNDPAEQVARETGARFGGVLYVDSLTGPDGPVPTYLDLLRVTSETVAEGLTTPLN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 7e-88 65
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 7e-88 65
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 5e-88 65
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 9e-88 65
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 7e-88 65

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dshi_1659 YP_001533002.1 metal ABC transporter substrate-binding lipoprotein BAC0349 Protein 3e-88 65
Dshi_1659 YP_001533002.1 metal ABC transporter substrate-binding lipoprotein BAC0439 Protein 5e-86 63

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dshi_1659 YP_001533002.1 metal ABC transporter substrate-binding lipoprotein VFG0525 Protein 3e-88 65