Gene Information

Name : Dshi_1658 (Dshi_1658)
Accession : YP_001533001.1
Strain : Dinoroseobacter shibae DFL 12
Genome accession: NC_009952
Putative virulence/resistance : Virulence
Product : metal transport system ATP-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 1723920 - 1724816 bp
Length : 897 bp
Strand : -
Note : SWISSPROT P15031: Iron(III) dicitrate transport ATP-binding protein fecE, Q55281: Manganese transport system ATP-binding protein mntA, P44662: Probable iron transport system ATP-binding protein HI0361; COG: COG1121 - ABC-type Mn/Zn transport systems, ATPa

DNA sequence : 
ATGCCCGAAGCCGCTGCCATTGAGACCCCAGTCCCGATCGGGCTGCGCGCGCGTGGGGTCACAGTGACTTATCGCAACGG
GCTGACCGCGCTCAACGATGCGAGTTTCGAAATTCCGCAAGGCTCTATCACCGCACTGGTGGGGGTGAATGGGGCGGGCA
AATCTACCTTGTTCAAGGCGATCATGGGGTTCGTTCCGGTCGCCAAGGGCGAGATCGAAGTGATGGGCGGCACGGTCGCG
GCTGCCCTGAAGGCCAACAAGATCGCCTATGTTCCGCAAAACGAAGAGGTCGACTGGTCCTTCCCTGTGTTGGTGGAGGA
CGTGGTGATGATGGGCCGTTACGGCCATATGGGATTGTTGCGCATTCCTTCCGCCAAGGACCGGCAGGCGGTGCAGGAGG
CGTTGGCGCGCGTCGGCATGGCAGAGTTTCGGACGCGCCAGATCGGCGAGTTGTCGGGCGGCCAGCGCAAGCGGGTGTTT
CTGGCGCGTGCACTGGCACAGAACGGGCAGGTGATCCTGCTCGACGAGCCATTCACGGGGGTGGATGTGCAGACCGAGGA
GGCCATCATCGCCCTGCTGCGCGATTTGAGGGATGAGGGCCGCGTGATGCTGGTCTCGACCCACAACCTCGGCTCGGTTC
CGGAATTCTGCGATCGGACAATCCTGATGAAAGGCACGGTTCTGGGCTATGGTCCGACGGAGACGACCTTCACCCAAGCG
AACCTGGAGCGAGCCTTCGGCGGAGTGCTGCGTCACTTCGTTCTTGAGGGCGCGGACCTGCATGACGATGACGACGCGCG
CAAGGTGATGATCTTTACCGACGACGAACGCCCGCTCGTTACCTATGACGAGAAGACCCGTACGCTGACCTCGCCCGATG
AGGGGGACACGCGGTGA

Protein sequence : 
MPEAAAIETPVPIGLRARGVTVTYRNGLTALNDASFEIPQGSITALVGVNGAGKSTLFKAIMGFVPVAKGEIEVMGGTVA
AALKANKIAYVPQNEEVDWSFPVLVEDVVMMGRYGHMGLLRIPSAKDRQAVQEALARVGMAEFRTRQIGELSGGQRKRVF
LARALAQNGQVILLDEPFTGVDVQTEEAIIALLRDLRDEGRVMLVSTHNLGSVPEFCDRTILMKGTVLGYGPTETTFTQA
NLERAFGGVLRHFVLEGADLHDDDDARKVMIFTDDERPLVTYDEKTRTLTSPDEGDTR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 2e-88 72
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 8e-89 72
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 4e-89 72
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 6e-89 72
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 2e-88 72

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dshi_1658 YP_001533001.1 metal transport system ATP-binding protein BAC0350 Protein 4e-89 72
Dshi_1658 YP_001533001.1 metal transport system ATP-binding protein BAC0440 Protein 3e-87 64
Dshi_1658 YP_001533001.1 metal transport system ATP-binding protein BAC0400 Protein 1e-49 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dshi_1658 YP_001533001.1 metal transport system ATP-binding protein VFG0526 Protein 4e-89 72