Gene Information

Name : Dshi_1656 (Dshi_1656)
Accession : YP_001532999.1
Strain : Dinoroseobacter shibae DFL 12
Genome accession: NC_009952
Putative virulence/resistance : Virulence
Product : ABC-3 metal transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 1722176 - 1723027 bp
Length : 852 bp
Strand : -
Note : SWISSPROT Q55282: Manganese transport system membrane protein mntB, P44660: Probable iron transport system membrane protein HI0359; COG: COG1108 - ABC-type Mn2+/Zn2+ transport systems, permease components; PFAM: pfam00950; SUPERFAMILY: SSF81345

DNA sequence : 
ATGATCGATACTCTCTTTGCGCCGTTCCAGTTTCCGTTCATGCAGAACGCATTCCTGATCGCGGTGCTCATTTCGGTGCC
CACGGCGATCCTGTCGTGCTTCGTGGTGCTGAAGGGCTGGAGCCTTATGGGCGACGCGATCAGCCATGCGGTGCTGCCCG
GGATCGTACTGGCCTATGTGCTGGGCATCCCGCTGATCTTCGGGGCTTTCGCGGCGGGAATGACCTGCGCGTTGGCGACG
GGATATCTGCAGGCCCACAGCCGGGTGAAGCAGGACACGGTGATGGGGGTGGTGTTCTCGGGGATGTTTGGGCTCGGGTT
GGTGATCTACACCAAGATCGAGACCAACATGCACCTTGACCACATCCTTTTCGGCAACATGTTGGGGATCGGGTCCGGGG
ATCTGGCGACCGCGGGCATCATTGCTGTGGTGGTTGCGGGCATCTTGTTGGTGAAATGGCGGGATTTCCTGCTTCATGCT
TTCGATCCGGCGCAGGCGCGGGCGGTGGGGCTACGGGTAGCCTGGCTTCATTACGGGCTTCTGGCGTTGATTTCGCTGAC
CATCGTTGCGGTGCTCAAGGCGGTCGGGATCATCCTTGCCATCGGCTTGCTGATCGCGCCCGGGGCGATTGCGTTTCTTG
TGACCAAGCGGTTCGTGCATATGCTGTGGATTGCGGTGGCGGTGACGTGCCTCGCGTCAATCTCCGGTGTCTATGCCAGT
TTCTGGCTCGACAGTGCGCCTGCACCGACAATCATTCTGATCCTGTCGGCGGTCTTCGTGGCAGCCTTCGTGCATAAGCT
CTGGCGCGCGGGCCGGACAGAACAGCGGACCGAGCCTTTGCCGGCCCCTTAG

Protein sequence : 
MIDTLFAPFQFPFMQNAFLIAVLISVPTAILSCFVVLKGWSLMGDAISHAVLPGIVLAYVLGIPLIFGAFAAGMTCALAT
GYLQAHSRVKQDTVMGVVFSGMFGLGLVIYTKIETNMHLDHILFGNMLGIGSGDLATAGIIAVVVAGILLVKWRDFLLHA
FDPAQARAVGLRVAWLHYGLLALISLTIVAVLKAVGIILAIGLLIAPGAIAFLVTKRFVHMLWIAVAVTCLASISGVYAS
FWLDSAPAPTIILILSAVFVAAFVHKLWRAGRTEQRTEPLPAP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD NP_461785.1 permease Virulence SPI-1 Protein 1e-67 59
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 8e-68 59
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-67 59
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-67 59
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-67 59

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dshi_1656 YP_001532999.1 ABC-3 metal transporter BAC0352 Protein 5e-68 59
Dshi_1656 YP_001532999.1 ABC-3 metal transporter BAC0442 Protein 4e-56 54

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dshi_1656 YP_001532999.1 ABC-3 metal transporter VFG0528 Protein 5e-68 59