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Name : Dole_1009 (Dole_1009) Accession : YP_001528896.1 Strain : Desulfococcus oleovorans Hxd3 Genome accession: NC_009943 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein CapD Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 1186967 - 1188874 bp Length : 1908 bp Strand : + Note : PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: sfu:Sfum_3360 polys DNA sequence : ATGAAAAAGCTTTATTTTTCCAAGAACGTGGTGATCGTGGTGGTGGTGGACGCGCTGCTTTTTTGTTGCGCTTTCTACCT TGCCTACCTGCTGCGTTTTGATTTTCACATTCCCCGATTTTATCGGGTCCCGTTTCAGCAGGTCCTTCCCCTGGTAATCC TGCTGAAGCTGGCCTCTTTTTACTGGTTCGACCTTTACCGGGGCATGTGGCGTTACACCAGCCTTTCCGACCTTTTTAAC ATCGTTAAAGCCGCTTTGATAACCAACCTGGTGATTGTGGGGGGGCTGCTGTTTTTCAATCGGTTCCAGGGATTTCCCCG TTCGGTTTTCCTCATCGACGCGCTGCTTACCATTCTGACTGTTTCCGGGTTTCGCATCCTGATCCGTATCTATTTCGAGC ACGCCGCAGGCGACAAGATGAGCCAGGTGGTGAAGAAAGCCTTTTCCCAGGTCTTTTCAAAAACTGACGGCCACACCCGT CGCGTGATCATTCTGGGCGCCGGGGACTGCGGGGAAAAGATATATCGGGAGATCGCCCATAATCCTTCCCTGGGTTTTCA GGTGGTGGGATTCCTTGATGACAACCCGGTAAAGGTGGGTAAAAAAATCCATGGCCTGCCCGTGCTGGGAGAAATTGCCG GGGTGTCCAAGTTTGTGGCCCGCCTGTCCATTGATGAACTGATCATTGCCATTCCTACGGCCACACCGGAACAAATGCGC ACCATCGTGGCGCTTTGCGAGAAGAGCGGCATTCCTTATAAAACCGTTCCGGGTTTTAGCGAACTGTTAAACGGTACGCC ATCTGTCGCAGCCCTGCGCAAGGTGGCCTATCGGGATTTGTTGGGCCGTGAGGTGGTGCGACTGGATAAGGAGGGTATCG GCGCCTACCTGGCGGGAAAAACCGTTCTGGTCACCGGCGCCGGCGGTTCTATCGGTTCGGAGTTGTGTCGCCAGATACTT GAGTTTTCTCCCGGACGGATTGTGCTGTTTGATCGGTCCGAAACGGCACTTTATGAGATCGACCTGGAACTCAAGGGGCA GCGCCGCGACACCGGGCTTCGTATTTCCCCGGTGCTGGGTGATATTCAGGACCAGCGCCAGCTTGAACACCTGTTTCAAC TGACAGCCCCCCATGTCGTGTTTCACGCGGCCGCTTATAAGCATGTCCCCATGCTGGAAGCACACCCCTGGAAGGCGGTA AAAAACAATATTATCGGTACACGGAACCTGGTGGAACTTTCCAAACGATTTGCCGTGGAACGATTCGTGCTGGTCTCAAC GGACAAGGCCGTGCGGCCCGCCAATGTGATGGGGGCCTCCAAGCGGGTGGCTGAACTGCTGCTTCAGTGCGGTAACGGAG GTGCCCCCTGCACCACGCAGTTCATGATCGTCCGGTTCGGAAACGTTCTGGGCAGCGCCGGCAGCGTGATTCCCCTGTTC CAAAAACAGATTGGAAAAGGCGGCCCGGTCACCGTGACCCATCCGGAGGTGACCCGTTTTTTTATGACCGTTTCCGAGGC GTGCCAACTGATTCTTCAGGCCGGCGCCATTGGCAACACGGGCCGGGGCAGGGCAGAAGTGTTTGTCCTCAAGATGGGAA CGCCGGTTAAAATAGTGGACATGGCCCGGGACCTGATCCGTCTGTCCGGCCTGGAGCCGGACAAAGACATTTCCATCGAA TTTGTCGGGCTTCGGCCCGGGGAAAAGCTGTATGAAGAACTGATCGTTGAAGGTGAAGGTGTGGTCCCCACCGAGCACGA GAAAATAATGGTGCTGCGAGGAGCCGAGGCCCACGCCGCCGTTCTCAATGGTGCCATTGAAGAACTGGAGCGGTCTGCTG AACTCCAGGATGGGGGCGCGATAAGGGTCTGGCTGAAAAAAATCGTCCCCGAATATGAACCCGCTTAA Protein sequence : MKKLYFSKNVVIVVVVDALLFCCAFYLAYLLRFDFHIPRFYRVPFQQVLPLVILLKLASFYWFDLYRGMWRYTSLSDLFN IVKAALITNLVIVGGLLFFNRFQGFPRSVFLIDALLTILTVSGFRILIRIYFEHAAGDKMSQVVKKAFSQVFSKTDGHTR RVIILGAGDCGEKIYREIAHNPSLGFQVVGFLDDNPVKVGKKIHGLPVLGEIAGVSKFVARLSIDELIIAIPTATPEQMR TIVALCEKSGIPYKTVPGFSELLNGTPSVAALRKVAYRDLLGREVVRLDKEGIGAYLAGKTVLVTGAGGSIGSELCRQIL EFSPGRIVLFDRSETALYEIDLELKGQRRDTGLRISPVLGDIQDQRQLEHLFQLTAPHVVFHAAAYKHVPMLEAHPWKAV KNNIIGTRNLVELSKRFAVERFVLVSTDKAVRPANVMGASKRVAELLLQCGNGGAPCTTQFMIVRFGNVLGSAGSVIPLF QKQIGKGGPVTVTHPEVTRFFMTVSEACQLILQAGAIGNTGRGRAEVFVLKMGTPVKIVDMARDLIRLSGLEPDKDISIE FVGLRPGEKLYEELIVEGEGVVPTEHEKIMVLRGAEAHAAVLNGAIEELERSAELQDGGAIRVWLKKIVPEYEPA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 3e-91 | 45 |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 9e-85 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Dole_1009 | YP_001528896.1 | polysaccharide biosynthesis protein CapD | VFG1300 | Protein | 1e-86 | 43 |
| Dole_1009 | YP_001528896.1 | polysaccharide biosynthesis protein CapD | VFG0029 | Protein | 1e-83 | 41 |
