Gene Information

Name : AZC_4200 (AZC_4200)
Accession : YP_001527116.1
Strain : Azorhizobium caulinodans ORS 571
Genome accession: NC_009937
Putative virulence/resistance : Virulence
Product : ATPase AAA
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0542
EC number : -
Position : 4786756 - 4789395 bp
Length : 2640 bp
Strand : -
Note : central region, Clp, N terminal

DNA sequence :
ATGAATTTTGAGATCTATACCGAGCGCGCCCGTGGTTTCGTGCAGTCGGCGCAGTCCTATGCGGTGCGCGAAGGCCACCA
GCAGTTCGTGCCCGAGCACCTGTTGAAGGTGCTGCTCGATGACCCCGAAGGCCTGTGCGCAGGCCTAGTGTCGCGCGCCG
GGGGCAATCTCCAGCTTGTGCGGGACGAGACCGAAGCGGCCGTCCGCAAGCTGCCCAAGGTGCAGGGCGGTTCCGGTCAG
GTGTATCTGAGCCAGGGTCTGGCGCGCGTGTTCGACGCCGCCGAGCAGGCCGCGAAGAAGGCAGGTGACGGCTATGTGAC
CGTCGAGCGCCTGCTGCTGGCCCTCACCATCGAGAAAGAGACCGAGGCGGGCAAGATCCTCGCCCGAGGCGGCGTCACGC
CGCAGGCGCTGAACACGGCCATCGAGGCGCTCCGCAAGGGTCGCACCGCCGATACGGCGACCGCCGAGAACGCTTATGAC
GCGCTGAAGAAATACGCCCGCGACCTCACACAGGCCGCGCGGGACGGCAAGCTCGACCCGGTGATCGGCCGCGATGAGGA
AATCCGCCGCACCATCCAGGTTCTGGCGCGCCGCACCAAGAACAATCCCGTGCTCATCGGCGAGCCCGGCGTCGGCAAGA
CCGCCATCGTGGAGGGCCTCGCCCGCCGCATCGTCGATGGCGACGTGCCGGAGAGCCTGAAGAACAAGAGCCTGCTGGCG
CTCGACATGGGCGCGCTCATCGCCGGCGCGAAATATCGCGGCGAGTTCGAGGAGCGCCTGAAGGGCATCCTTCAGGAAGT
GACGGCGGCCGAAGGCGGCATCATCCTGTTCATCGACGAGATGCACACCCTCGTCGGCGCAGGCAAGACCGATGGCGCCA
TGGATGCCTCCAACCTGCTGAAGCCCGCGCTGGCGCGCGGTGAGCTGCACTGCGTCGGCGCGACCACGCTCGACGAGTAT
CGCAAGCATGTGGAGAAGGATGCGGCGCTCGCCCGCCGCTTCCAGCCGGTGTTCGTCAGCGAGCCCACGGTGGAGGACAC
GGTGTCCATCCTGCGCGGGCTCAAGGAGAAGTATGAGCTGCATCACGGCGTGCGCATCACCGACAGCGCGCTCGTGGCCG
CCGCCACCCTCTCCAATCGCTACATCACCGACCGCTTCCTGCCCGATAAGGCCATCGACCTCGTGGACGAGGCCGGCTCG
CGGCTGCGCATGCAGGTGGACTCGAAGCCTGAGGAACTGGACAGCCTCGACCGTGACATCGTCCGGCTCAAGATCGAGCA
GGAGGCCCTGAAGAAGGAGACCGACGTCGCCTCGCAGGACCGCCTGAAGCGGCTTGAGAAGGAACTGGCCGATCTGGAAG
AGAAGTCCGACGTCCTCACTTCCAAGTGGAAGGCGGAGAAGGACAAGCTCGGCGAAGCCACCGATGTGAAGGCGAAGCTC
GACCAGGCCCGCGCCGATCTCGCGATCGCGCAGCGCCAGGGCGAGTATCAGAAGGCCGGCGAGCTGACCTATGCGGTCAT
CCCCGGTCTCGAGAAGCGCCTTGCGGAGCTGGAGGCCAGCGGCCAGTCGGGCGAGATGGTGAAGGAGAGCGTGACACCGG
ACCATATCGCGGGCGTCGTCTCGCGCTGGACCGGCGTGCCGGTGGACAAGATGCTGGAAGGCGAGCGGGACAAGCTGCTG
CGCATGGAGCAGGAGCTGGCCAAGCGCGTCATCGGCCAGTCCGAGGCGGTGGCCGCGGTCTCGACCGCGGTGCGCCGGGC
GCGGGCGGGCTTGCAGGATCCCAACCGGCCCATCGGCTCCTTCCTCTTCATCGGCCCCACCGGCGTCGGCAAGACCGAGC
TGACCAAGGCTCTGGCCAGCTTCCTGTTCGACGACGAGACCGCCATGGTGCGCCTCGACATGTCGGAATACATGGAGAAG
CACTCCGTGAGCCGGCTGATCGGCGCACCTCCCGGCTATGTGGGCTATGAGGAGGGCGGTGCCCTCACCGAAGCCGTGCG
GCGCCGGCCCTATCAGGTGGTGCTGTTCGACGAGGTGGAGAAGGCCCATCAGGACGTCTTCAACGTCCTCCTTCAGGTGC
TCGACGACGGTCGCCTGACGGATGGACAGGGGCGCACCGTGGACTTCCGCAACACCCTCATCATCATGACCTCGAACCTC
GGGGCCGAATATCTGGCGGATCCGCGCCAGCCGGTCGGCTTCGGCATTCCCGGCCATGACGGCGAGAAGGTGGTTTCGGA
CGAGGAAGCCTATGAGCTGGTGATGCAGGCGGTGCGGCGTCACTTCCGCCCCGAATTCATCAACCGCATCGACGAGATCG
TCATGTTCCACCGCCTGCGGAAGGATCAGATGGGCGGCATCGTCGAGATCCAGCTCAAGCGGCTCGCGAAGCTCCTGGAG
GATCGCAAGATCACTCTCGACCTCACGCCCGAGGCACGGGCCTTCCTCGCCGACAAGGGTTACGACCCCGCCTATGGCGC
CCGCCCGCTGAAGCGGACGATCCAGAAGCTGGTGCAGGATCCGCTGGCCCAGCAGATCCTCTCCGGCGAGGTGCTGGATG
GCAGCCGCGTCCACATCGGCCTTGAGAACGGCCACCTCACCTTCCGGGGTGAGGCGGCGCCGGTGGATCAGGCCGCCTGA

Protein sequence :
MNFEIYTERARGFVQSAQSYAVREGHQQFVPEHLLKVLLDDPEGLCAGLVSRAGGNLQLVRDETEAAVRKLPKVQGGSGQ
VYLSQGLARVFDAAEQAAKKAGDGYVTVERLLLALTIEKETEAGKILARGGVTPQALNTAIEALRKGRTADTATAENAYD
ALKKYARDLTQAARDGKLDPVIGRDEEIRRTIQVLARRTKNNPVLIGEPGVGKTAIVEGLARRIVDGDVPESLKNKSLLA
LDMGALIAGAKYRGEFEERLKGILQEVTAAEGGIILFIDEMHTLVGAGKTDGAMDASNLLKPALARGELHCVGATTLDEY
RKHVEKDAALARRFQPVFVSEPTVEDTVSILRGLKEKYELHHGVRITDSALVAAATLSNRYITDRFLPDKAIDLVDEAGS
RLRMQVDSKPEELDSLDRDIVRLKIEQEALKKETDVASQDRLKRLEKELADLEEKSDVLTSKWKAEKDKLGEATDVKAKL
DQARADLAIAQRQGEYQKAGELTYAVIPGLEKRLAELEASGQSGEMVKESVTPDHIAGVVSRWTGVPVDKMLEGERDKLL
RMEQELAKRVIGQSEAVAAVSTAVRRARAGLQDPNRPIGSFLFIGPTGVGKTELTKALASFLFDDETAMVRLDMSEYMEK
HSVSRLIGAPPGYVGYEEGGALTEAVRRRPYQVVLFDEVEKAHQDVFNVLLQVLDDGRLTDGQGRTVDFRNTLIIMTSNL
GAEYLADPRQPVGFGIPGHDGEKVVSDEEAYELVMQAVRRHFRPEFINRIDEIVMFHRLRKDQMGGIVEIQLKRLAKLLE
DRKITLDLTPEARAFLADKGYDPAYGARPLKRTIQKLVQDPLAQQILSGEVLDGSRVHIGLENGHLTFRGEAAPVDQAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 3e-172 45
aec27 YP_851418.1 ATPase Not tested PAI II APEC-O1 Protein 1e-102 43
aec27 AAQ96721.1 Aec27 Not tested AGI-1 Protein 8e-103 43
STY0294 NP_454876.1 ClpB-like protein Not tested SPI-6 Protein 1e-103 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
AZC_4200 YP_001527116.1 ATPase AAA VFG0079 Protein 1e-171 47
AZC_4200 YP_001527116.1 ATPase AAA VFG0080 Protein 1e-134 45
AZC_4200 YP_001527116.1 ATPase AAA VFG2084 Protein 6e-109 43
AZC_4200 YP_001527116.1 ATPase AAA VFG2076 Protein 6e-117 42