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Name : lysS (AM1_5458) Accession : YP_001519733.1 Strain : Acaryochloris marina MBIC11017 Genome accession: NC_009925 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 5514863 - 5516416 bp Length : 1554 bp Strand : - Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGGCTGCTGATCGGGCGTCTGAGTCACCCAACCAGGGCTCCACTTTAGAAGAAGTGAGAGCTACTCGTTTGCAAAAGGT TGAGCAGCTCAAACAAGCAGGCTTAACCCCCTATGCCTATCGGTGGCAGTCTACCCATACTGCCCAGGCTCTACAAGAGA AATTTGTGGATCTGGCGAATGGTGAAGAGGAGGATTTTGAGGTTGCGATCGCAGGTCGTATCCTCGCTCGCCGCGTTTTC GGTAAACTGGCCTTCTTCAACCTCCAGGACGAAACAGGAACCATCCAGCTCTACTTGGAAAAAAAGCGGATTCAAGAGCA GATGGGGGAGCAAGATGAGCAAGCCTTTAACCACCTCAAACAGCTCACTGACGTGGGGGACTTCATCGGGGTTCAAGGCA CTATTAAGCGTACCGATAAAGGTGAACTCTCTGTCTATGTACAGACCTACACTGTGCTCACCAAGTCCTTATTGCCCCTA CCTGACAAATGGCATGGCTTGACTGATATTGCCAAGCGATATCGCCAACGCTATGTAGATCTGATTGTCAATCCATCTGT ACGGGAGACGTTTCGACGACGGGCTCAGATCACCGCCAGTATTCGCCGCTATTTAGACGAGCAGGGATTTATTGAAATTG AAACCCCCGTCTTGAACTCCGAAGCAGGAGGTGCAGAGGCCCGTCCGTTCATCACTTACCACAACACAATGGAGATGGAT CTGTATCTGCGGATCGCAACGGAACTGCATTTGAAGCGCCTAATTGTTGGCGGTTTTGAAAAAGTCTTTGAACTGGGACG AGTATTTCGTAACGAAGGGATTTCCACCCGCCACAACCCAGAGTTCACGACCATCGAAGTTTACCAAGCCTATGCCGACT ACAACGACATGATGGATTTAACGGAAGCGTTGATCTGTACTGCAGCAGAACGTTCTGTGGGCAGTTTGAAAGTGCCTTAC CAAGGCGAAACCATCGATCTCACCTCTCCGTGGCGACGAGTGACTATGCATGATGCAGTGCAAGAGAAAACGGGGCTAGA TTTCACCACTTTTGAGACGGTAGAAGCAGCCCAAAAAGCGGCAACGAAGGCAGGCATCACAGGGGTAGACGATTGTGAGA GTGTGGGGCATGTTTTGAACGAAGCCTTTGAGCAAAAGGTAGAGGCGACTCTAATTCAACCCACCTTTATTCTTGACTAT CCAGTTGAGATTTCCCCCTTAGCGAAACCCCACCGGTCGCAGTCTGGACTGGTTGAACGATTCGAACTGTTTATCGTGGG TCGAGAGACCGCCAATAGTTTCTCAGAATTGACGGATCCAGTGGATCAGCGTCAGCGCTTAGAGGCTCAAGCTGCCCGTA AGGAAGCAGGCGACTTGGAAGCGCACGGTGTGGATGAGGACTTCATCACTGCCTTGGAATATGGCATGCCTCCCACAGGC GGATTAGGCATTGGTATAGATCGCTTAGCAATGCTGCTGAGTGATGCGGCCAGTATTCGCGATGTGATTGCTTTCCCCCT CTTAAAACCTGAGAAATCTGAAGATGAAGGATAA Protein sequence : MAADRASESPNQGSTLEEVRATRLQKVEQLKQAGLTPYAYRWQSTHTAQALQEKFVDLANGEEEDFEVAIAGRILARRVF GKLAFFNLQDETGTIQLYLEKKRIQEQMGEQDEQAFNHLKQLTDVGDFIGVQGTIKRTDKGELSVYVQTYTVLTKSLLPL PDKWHGLTDIAKRYRQRYVDLIVNPSVRETFRRRAQITASIRRYLDEQGFIEIETPVLNSEAGGAEARPFITYHNTMEMD LYLRIATELHLKRLIVGGFEKVFELGRVFRNEGISTRHNPEFTTIEVYQAYADYNDMMDLTEALICTAAERSVGSLKVPY QGETIDLTSPWRRVTMHDAVQEKTGLDFTTFETVEAAQKAATKAGITGVDDCESVGHVLNEAFEQKVEATLIQPTFILDY PVEISPLAKPHRSQSGLVERFELFIVGRETANSFSELTDPVDQRQRLEAQAARKEAGDLEAHGVDEDFITALEYGMPPTG GLGIGIDRLAMLLSDAASIRDVIAFPLLKPEKSEDEG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 2e-104 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_001519733.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 1e-104 | 47 |
