Gene Information

Name : Clos_0320 (Clos_0320)
Accession : YP_001511879.1
Strain : Alkaliphilus oremlandii OhILAs
Genome accession: NC_009922
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 375667 - 376470 bp
Length : 804 bp
Strand : +
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ctc:CTC01197 ferric enterobactin transport ATP-binding protein fepC

DNA sequence : 
GTGCTAGAGGTTAAAAATTTATCCTTAGGATATGACGATTCCATCATCGTAAAAGATGTATCCTTTAATATTTCAGATAA
AAGCATCACAACGATTATAGGGCCCAATGGCTGTGGAAAATCAACGATATTGAAGGCACTTTCTAAAAATAAAAAACCAA
TACAGGGAGATATCGTTTTTCAAGATAGAAATATACAGGAATTTCAGACGAAACAATTAGCAAGAAAAATGTCCATTCTT
CCACAGAGTCCTAGAGTGCCCGATGATTTTACGACAAGAGATTTAGTGGGATATGGGAGATACCCCCATCTGAGCTGGAC
CGGGAGGCTCAGTAAAAAAGACCAAGAAATCATTGATTGGGCAATTGCAGAAACAAAGCTAGAAAAACTTCAACATCGAC
AGGTGTCTACTATGTCGGGGGGAGAGCGGCAGAGAGCGTGGATTGCCATGGCATTGGCACAGCAGCCAGAGATTCTGCTT
TTGGATGAACCCACTACATTTTTAGATATATGTCATCAATTTGAGCTTTTGGAGCTCATAAAAAAGCTCAATAGAGAAAT
GGGCATTACCATCGTCATGGTACTGCATGATTTAAATCAGGCAGCAAGATATTCCAAAAAAATAATTGTCGTTAAAGATG
GGGAAAAATATATGGAAGGAATTCCGAGAGACGTTATAAAGAAGCAAGTATTGGAAGAGGTCTTTAATATAGAAGTCAAT
ATTCTAGAGGATCAGGATAATGAATGTCCGTATTTTATTCCAATCAATATAAAGACAGGAGAAAAGTTTAACGGAGCACT
TTAA

Protein sequence : 
MLEVKNLSLGYDDSIIVKDVSFNISDKSITTIIGPNGCGKSTILKALSKNKKPIQGDIVFQDRNIQEFQTKQLARKMSIL
PQSPRVPDDFTTRDLVGYGRYPHLSWTGRLSKKDQEIIDWAIAETKLEKLQHRQVSTMSGGERQRAWIAMALAQQPEILL
LDEPTTFLDICHQFELLELIKKLNREMGITIVMVLHDLNQAARYSKKIIVVKDGEKYMEGIPRDVIKKQVLEEVFNIEVN
ILEDQDNECPYFIPINIKTGEKFNGAL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-53 44
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 5e-53 44
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 5e-53 44
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 1e-46 44
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 8e-50 43
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 7e-50 43
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 7e-50 43
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 8e-50 43
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 6e-49 42
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 6e-49 42
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 6e-49 42
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 6e-49 42
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 9e-51 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clos_0320 YP_001511879.1 ABC transporter BAC0164 Protein 9e-47 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clos_0320 YP_001511879.1 ABC transporter VFG1042 Protein 8e-47 44
Clos_0320 YP_001511879.1 ABC transporter VFG0925 Protein 4e-53 42