Gene Information

Name : Clos_2616 (Clos_2616)
Accession : YP_001514143.1
Strain : Alkaliphilus oremlandii OhILAs
Genome accession: NC_009922
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 2834980 - 2835690 bp
Length : 711 bp
Strand : -
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: smu:SMU.863 putative ABC transporter, ATP-binding protein

DNA sequence : 
TTGGCACTTTTAGAGATAACGGATGTAGCACGAAGCTATAAGGATGGGCAGGTAAGTGTACAGGCGCTGAAGGGCGTTAC
GATATCCATTGAAGACGGAGAATTTGTTTCTATTATGGGACCCTCTGGATCTGGGAAATCGACATTGATGAATATCATAG
GCTGTTTAGATAAACCTACAGCTGGAACCTATTCTTTGGCCAACCAGCAAGTGCAGAAAATGAATGATTGGCAGCTGGCC
AACATCAGAAACGAGTTTATGGGGTTCGTCTTCCAGCAGTTCCATTTAATATCAAAGCTAAATGCCTTGGAAAATGTCGA
GCTGCCTTTAATTTATCAAGGGGTTATCGGTAAGGAAAGAAAGCAGAGGGCTAAGGAGGCCTTGGAAGCTGTAGGATTGG
GCGAGAGAATCAAGCATATGCCTTCCCAGCTTTCCGGTGGAGAGCAACAAAGAGTTGCCATTGCAAGAGCCATCGTAAGT
AATCCCAGATTGATTTTAGCGGATGAGCCTACAGGAGCACTGGATTCAAAGGCAAGTAAGAACATTATGGAAATATTCCA
GCAGTTGAACAAGGAAAGAAAGATCACCATCGTCCAAGTAACCCATGAGAGAAATATTGGGGAATACGGCAAACGAATTT
ACCATTTAAAAGATGGGTTGATTGATTACATAGAAGAAATACAGCGTACAGAGTTAGAAAATAATGCGTAA

Protein sequence : 
MALLEITDVARSYKDGQVSVQALKGVTISIEDGEFVSIMGPSGSGKSTLMNIIGCLDKPTAGTYSLANQQVQKMNDWQLA
NIRNEFMGFVFQQFHLISKLNALENVELPLIYQGVIGKERKQRAKEALEAVGLGERIKHMPSQLSGGEQQRVAIARAIVS
NPRLILADEPTGALDSKASKNIMEIFQQLNKERKITIVQVTHERNIGEYGKRIYHLKDGLIDYIEEIQRTELENNA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 4e-31 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clos_2616 YP_001514143.1 ABC transporter NC_012469.1.7686878. Protein 3e-59 57
Clos_2616 YP_001514143.1 ABC transporter NC_008702.1.4606598. Protein 3e-43 44
Clos_2616 YP_001514143.1 ABC transporter CP001581.1.gene798.p Protein 5e-42 43
Clos_2616 YP_001514143.1 ABC transporter CP001581.1.gene598.p Protein 4e-39 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clos_2616 YP_001514143.1 ABC transporter VFG0869 Protein 4e-25 41