Gene Information

Name : Clos_0257 (Clos_0257)
Accession : YP_001511816.1
Strain : Alkaliphilus oremlandii OhILAs
Genome accession: NC_009922
Putative virulence/resistance : Unknown
Product : short-chain dehydrogenase/reductase SDR
Function : -
COG functional category : I : Lipid transport and metabolism
COG ID : COG1028
EC number : -
Position : 304213 - 304953 bp
Length : 741 bp
Strand : +
Note : PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: amt:Amet_4631 3-oxoacyl-(acyl-carrier-protein) reductase

DNA sequence : 
ATGAGATTAGATGGTAAAGTTGCAGTTGTAACAGGATCAACTTCCGGTATTGGTAAAGCTACAATCGTTAGATTTGCAGA
AGAAGGCGCCAAGGTAGTTGTTTGGGGTATTACGGAGGCAGAGGTAAACCCTGTAGTAGCAGAGCTAGAGGAAAAAGGCG
CAGAAGTACTGGGTGTCGTTGCCAACGTAACAGATTACGAGGAAGTAAACCGCACCATGGATCAAATCAAAGAGCATTTT
GGAAAAATTGATATCATTGTTAACAATGCAGGGATTACAGCAGATGCACAAATATTAAAAATGACAGAAGAGCAATTTGA
TAAAGTTATCAGCGTAAACTTAAAAGGTGTATTTAACACTGGCCAAGCAGCAGCTAAAATAATGGCAGAGCAAGGTTTTG
GTGTAATTTTAAGCACTTCTTCCGTTGTTGGATTATACGGCAACTTTGGACAAACAAACTATGCGGCAACAAAGTTTGCA
GTAATCGGAATGACAAAGACATGGGCAAAAGAACTGGGAAGAAAAGGTGTAAGAGCCAATGCAGTAGCACCAGGATTCAT
TGCTACTGAAATGACTGCAAAAATGCCAGAAAATGTATTGACAATGATGAAAGAAAAATCTCCTTTAAAAGCGCTGGGTG
AGCCAAGAGATATTGCCAATGCATTCTTGTTCTTAGCATCGGATGAGGCAAAATATATTAGTGGTGCTGTACTTTCTGTA
GACGGCGCAGTTACATTATAG

Protein sequence : 
MRLDGKVAVVTGSTSGIGKATIVRFAEEGAKVVVWGITEAEVNPVVAELEEKGAEVLGVVANVTDYEEVNRTMDQIKEHF
GKIDIIVNNAGITADAQILKMTEEQFDKVISVNLKGVFNTGQAAAKIMAEQGFGVILSTSSVVGLYGNFGQTNYAATKFA
VIGMTKTWAKELGRKGVRANAVAPGFIATEMTAKMPENVLTMMKEKSPLKALGEPRDIANAFLFLASDEAKYISGAVLSV
DGAVTL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAT96098.1 putative short-chain type regulator dehydrogenase Not tested T-PAI Protein 2e-38 43
unnamed AAT96054.1 putative short-chain type regulator Not tested T-PAI Protein 5e-38 42
unnamed AAT96175.1 putative short-chain type regulator Not tested T-PAI Protein 2e-38 42
unnamed AAT96227.1 putative short-chain type regulator Not tested T-PAI Protein 1e-38 42
unnamed AAT96115.1 putative short-chain type regulator Not tested T-PAI Protein 4e-39 42