Gene Information

Name : Clos_2430 (Clos_2430)
Accession : YP_001513958.1
Strain : Alkaliphilus oremlandii OhILAs
Genome accession: NC_009922
Putative virulence/resistance : Virulence
Product : transport system permease protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0609
EC number : -
Position : 2626672 - 2627670 bp
Length : 999 bp
Strand : -
Note : PFAM: transport system permease protein; KEGG: dsy:DSY1003 hypothetical protein

DNA sequence :
ATGAAGCAACCTAAATTAAGTTCGTTAATCGTTGTAAGTTTAATAGTCCTAGGGGCATGTGCCTTAGCTTCATTAGCATT
TGGTGCAAGATTCGTAGATTTTATGGAAGTAATAGAGACGTTAATCCACTCTAGAAAAACAACGATTAACGAAATTGTAG
TCCATGAAAGAATTCCGAGAACTGTCTTCGGTATGATTGCCGGAGCCGCTCTTGGTGTATCTGGAGCACTGATGCAGTCC
ATTACTCGGAATCCTATAGCGGACCCCAGTATTTTAGGCGTAAATACAGGTGCTTCTTTGTTTGTTGTCGGCGGAATTGC
ATTTTTTCAAATTAGTTCATCAAATGAATATATAGTATTTGCTTTAGTTGGGGCAGCTGTTACTTCAATTTTTGTTTATA
GTATCGGTTCTTTGGGTCAGGGAGGAGCCACACCTATAAAACTAGCATTGGCTGGCGTTGCAACCAGTGCAGCACTAACT
TCCTTAGTCAGTGCTATCATATTGCTTCGGAATGATGTAATGAATGCTGTTCGTTTTTGGCAGGTAGGCAGTGTCAGTGG
CGCTACATGGGAAGGAATATTTTCAGTAATCCCCTTTATCGTAGCAGGAATTGTCCTTGCAATATTTTTAACCCCTTCCT
TAGATGCACTTTCCATGGGCGATGATATTGCAACTGGGCTAGGGGTTCGTACGGGACTTGTAAGGCTTATTGGGGCCTTT
GCTGGCGTGCTTCTATGTGGAGCAACGACAGCTTTAGCAGGTCCCATCGGTTTTATCGGCATCATGGTTCCTCATACTAT
GAGGTTAATCTGTGGTCCTAATTTAAAAAGAGTGATCCCCATGTCAGCAGTCGGTGGCGCTGTACTCTTACTAGTTGCCG
ACATTTTAGGGAGGGTTATCGGAAGTCCCAGCGAGGTTGAAGCAGGAGTAATTACTGCATTTGTTGGGGCCCCAATACTT
ATTATCATTGCAATGAGAGCGAAGGTGCGGGCCTTATGA

Protein sequence :
MKQPKLSSLIVVSLIVLGACALASLAFGARFVDFMEVIETLIHSRKTTINEIVVHERIPRTVFGMIAGAALGVSGALMQS
ITRNPIADPSILGVNTGASLFVVGGIAFFQISSSNEYIVFALVGAAVTSIFVYSIGSLGQGGATPIKLALAGVATSAALT
SLVSAIILLRNDVMNAVRFWQVGSVSGATWEGIFSVIPFIVAGIVLAIFLTPSLDALSMGDDIATGLGVRTGLVRLIGAF
AGVLLCGATTALAGPIGFIGIMVPHTMRLICGPNLKRVIPMSAVGGAVLLLVADILGRVIGSPSEVEAGVITAFVGAPIL
IIIAMRAKVRAL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SP_1033 NP_345508.1 iron ABC transporter permease Virulence PPI-1 Protein 2e-54 50
SPN23F_09540 YP_002510937.1 ferric siderophore ABC transporter permease Virulence PPI-1 Protein 2e-54 47
fagA YP_005680309.1 hypothetical protein Not tested PiCp 1 Protein 3e-32 41
fagA YP_005682399.1 hypothetical protein Virulence PiCp 1 Protein 3e-32 41
fagA YP_003782432.1 integral membrane protein Virulence PiCp 1 Protein 3e-32 41
fagA YP_005684490.1 hypothetical protein Not tested PiCp 1 Protein 3e-32 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clos_2430 YP_001513958.1 transport system permease protein VFG0926 Protein 9e-35 45