Gene Information

Name : Clos_2428 (Clos_2428)
Accession : YP_001513956.1
Strain : Alkaliphilus oremlandii OhILAs
Genome accession: NC_009922
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 2624841 - 2625644 bp
Length : 804 bp
Strand : -
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY1005 hypothetical protein

DNA sequence : 
ATGAATACATCAAAAACACTACAAGCAAATCATATAGTTGCTGGCTATGATCATAAAATTATTAATGATGATATCAGCAT
ATTGATTCCAAAGAACAAAATTAGCGTCATCATTGGAGCGAATGCCTGTGGAAAATCTACTTTGCTGAAAACCATGGCTC
GTTTGATACAACCTTCTTCGGGAAGCATAACACTAGATGGTAAGAAAATCAGCGAAATTCCACCGAAGGAATTAGCGCGT
TCTCTTGGGCTTCTTCCCCAATCCCCTATTGTACCGGAAGGGATCACAGTAGCAGATTTAGTGAGTAGAGGGAGATTCCC
CTATCAGTCCTTTTTAAAAGGATTAGGGAAAGGCGATTACGAGGCAGTAGAGGAAGCCTTAGAAATTATGGGGATCACAG
ATATTGCAAATCGCTGTGTAGATGAGCTTTCAGGAGGGCAAAGACAACGGGTTTGGATTGCAATGGCATTGGCCCAAGAA
ACAGATATTCTTCTTTTAGACGAGCCTACAACCTATTTAGATATTACTTATCAAATTGAGATCTTAGATTTATTGACAGA
TTTAAATCAAAAAAAAGGAACGACAATCGTTATGGTTCTTCATGATATTAACTTATCGGCTCGTTATGCAGACTATATAT
TTGCGTTGCATAAAGGAAAGTTAATTTCTGAAGGAGAGCCAAATAAAATAATTACGGAGAATCTGATTAAGGATGTATTT
GATCTGGATTGTGCAGTTATAAACGATCCCGTTTCAGGTACGCCATTTATAGTTCCCAAAGGAAGACATCATGTTAATAT
ATAA

Protein sequence : 
MNTSKTLQANHIVAGYDHKIINDDISILIPKNKISVIIGANACGKSTLLKTMARLIQPSSGSITLDGKKISEIPPKELAR
SLGLLPQSPIVPEGITVADLVSRGRFPYQSFLKGLGKGDYEAVEEALEIMGITDIANRCVDELSGGQRQRVWIAMALAQE
TDILLLDEPTTYLDITYQIEILDLLTDLNQKKGTTIVMVLHDINLSARYADYIFALHKGKLISEGEPNKIITENLIKDVF
DLDCAVINDPVSGTPFIVPKGRHHVNI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 9e-79 61
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 9e-79 61
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-68 51
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 1e-50 45
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 3e-55 43
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 3e-55 43
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 3e-55 43
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 3e-55 43
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 2e-48 42
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 4e-51 41
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 4e-51 41
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 4e-51 41
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 4e-51 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clos_2428 YP_001513956.1 ABC transporter BAC0164 Protein 1e-48 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clos_2428 YP_001513956.1 ABC transporter VFG0925 Protein 9e-66 49
Clos_2428 YP_001513956.1 ABC transporter VFG1042 Protein 1e-48 42