Gene Information

Name : Clos_0141 (Clos_0141)
Accession : YP_001511704.1
Strain : Alkaliphilus oremlandii OhILAs
Genome accession: NC_009922
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 166614 - 167306 bp
Length : 693 bp
Strand : +
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_1555 ABC transporter related

DNA sequence : 
ATGAGTAGCATTATAAAGATTGAAAATATTAGCAAGGTATACGATACGGGTGCCGTGCAGGTGCATGCACTACGAGAAGT
GAGTCTTTCCATAGAGGAAGGGGATTTTGTTGCTATTATGGGCCAGTCTGGTTCTGGAAAATCGACCTTGATGAACATTC
TCGGCTGTTTGGATAAACCAACAAGTGGCATTTATGAACTGGATGGAATTAATATTTCTAAAACGGACAATAGAGATCTT
TCTTCTATAAGAAATAAAAAAATAGGATTTGTTTTTCAATCCTTCAATTTAATTCCCCGAACATCTGCCCTGAAAAATGT
TGAGCTGCCTATGATCTATGCCAAAATGGGTAAAAAAGAAAGGCAAAAAAGAGCCAAAGAGCTGTTGGAAAGAGTCGGTT
TAGGGGATCGGCTGGACCATATGCCCAACGAAATCTCCGGAGGTCAGAAGCAGAGAATTGCTATTGCTAGGGCTCTTGCC
AATAAACCCTCCATTATTTTAGCTGACGAACCTACAGGAAACTTAGATACCGCCTCTTCTGAGGAAATCATGAACCTTTT
TACTGAACTGAATAATGAAGGTGTAACTGTGATTGTTGTTACCCATGAGGACAATATAGCCGAATACACCAAAAGAACCA
TCCGTTTTCGAGACGGGCAGATCATTGAAGACAGAAGGAGGGAGACAAAGTAA

Protein sequence : 
MSSIIKIENISKVYDTGAVQVHALREVSLSIEEGDFVAIMGQSGSGKSTLMNILGCLDKPTSGIYELDGINISKTDNRDL
SSIRNKKIGFVFQSFNLIPRTSALKNVELPMIYAKMGKKERQKRAKELLERVGLGDRLDHMPNEISGGQKQRIAIARALA
NKPSIILADEPTGNLDTASSEEIMNLFTELNNEGVTVIVVTHEDNIAEYTKRTIRFRDGQIIEDRRRETK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 3e-35 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clos_0141 YP_001511704.1 ABC transporter NC_012469.1.7686878. Protein 6e-59 54
Clos_0141 YP_001511704.1 ABC transporter NC_008702.1.4606598. Protein 7e-47 48
Clos_0141 YP_001511704.1 ABC transporter NC_012469.1.7686946. Protein 2e-29 44
Clos_0141 YP_001511704.1 ABC transporter CP001581.1.gene798.p Protein 3e-40 43
Clos_0141 YP_001511704.1 ABC transporter CP001581.1.gene598.p Protein 1e-38 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clos_0141 YP_001511704.1 ABC transporter VFG0869 Protein 6e-24 41