Gene Information

Name : Clos_1482 (Clos_1482)
Accession : YP_001513022.1
Strain : Alkaliphilus oremlandii OhILAs
Genome accession: NC_009922
Putative virulence/resistance : Virulence
Product : flagellar protein export ATPase FliI
Function : -
COG functional category : N : Cell motility
COG ID : COG1157
EC number : 3.6.3.14
Position : 1589205 - 1590518 bp
Length : 1314 bp
Strand : +
Note : KEGG: cth:Cthe_0468 flagellar protein export ATPase FliI; TIGRFAM: ATPase, FliI/YscN family; flagellar protein export ATPase FliI; type III secretion apparatus H+-transporting two-sector ATPase; PFAM: H+transporting two-sector ATPase alpha/beta subunit ce

DNA sequence :
ATGGAAACCATTTCTTTAAAAAAATATGAAGAAGCACTTTCGAAGCTAGATCTAATCAAATATACTGGATATGTTTCACA
AGTAATCGGACTAACCATAGAATCCGTAGGACCAGCGGTAAAACTTGGAGAAATGTGTAAGATATATTCCCTTAAGGGAA
CGGAGCCTATTTTATCTGAGGTTGTTGGCTTTAAAGAAAAAAAAGTATTATTAATGCCATTAGGTGAAATGGAAGGCATC
GGTCCGGGCAGTAAAGTTGAAGCCTTAGGAATTACAATGCAGGTAAGCGTTGGAGAGGAACTTTTAGGACGTGTTTTGGA
TGGGCTAGGTAACCCTATTGATGATAAGGAGCTGTTAAACACCAATAAGACATACCCAGTTATGGCTGCACCTCCCAATC
CATTGAAGCGTACTAAAATTAACGAGCCCTTAGCCCTAGGAGTGAAAACTCTGGATGGACTGCTGACCTGTGGCAATGGT
CAAAGAATCGGAATATTTGCAGGGAGTGGGGTTGGAAAAAGTACGCTCCTTGGCATGATCGCCAGAAATACACAGGCAGA
TATCAATGTTATCGCCCTAATTGGAGAGCGGGGGAGAGAAGTTCGGGAATTTATAGAAAATGATTTACAAGAAGAAGGAT
TAAAACGTTCCGTTGTTATTGTAGCAACCTCCGATCAACCAGCTCTCATCAGAAAAAAAGGGGCTTTACTGGCAACGGCT
GTTGCAGAGTATTTTAGAGATCAAGGAAAAAATGTAATCTTAATGATGGACTCCTTAACGAGGTTCTCTATGGCTCAAAG
GGAAGTTGGGCTAGCCGTCGGTGAACCTCCTGTAAGTAGGGGCTATACCCCCTCTGTATTTGCAGAGCTGCCTAAATTAC
TAGAGAGGTCGGGTACATCAGATAAAGGCTCGATTACAGGGTTATATACGGTTTTAGTAGACGGTGATGATATGAATGAA
CCCATTGCCGATACCGTTCGAGGAATACTGGATGGTCATATTGTTCTATCTAGAAAAATTGCCAACAGAAATCATTATCC
TGCCATCGATGTATTAGCAAGTGTTAGTAGGGTAATGCCGAATATCGTAGAGAAGAAGCATCTACTAATCGCAAATGAGA
TCAAGGAACTATTATCTACATATAATAGTTCGGAGGATCTAATAAATATAGGGGCCTATATCAAGGGAACCAATAGAAGG
ATTGATGAATCCATCAATAAAATAGATAGTATCAATTCATTTTTGAGACAGGATGTACATGATAAAACTACTCTAGAAGA
TGCAATTACTATGATGGAAGAAATTGTAACGTAG

Protein sequence :
METISLKKYEEALSKLDLIKYTGYVSQVIGLTIESVGPAVKLGEMCKIYSLKGTEPILSEVVGFKEKKVLLMPLGEMEGI
GPGSKVEALGITMQVSVGEELLGRVLDGLGNPIDDKELLNTNKTYPVMAAPPNPLKRTKINEPLALGVKTLDGLLTCGNG
QRIGIFAGSGVGKSTLLGMIARNTQADINVIALIGERGREVREFIENDLQEEGLKRSVVIVATSDQPALIRKKGALLATA
VAEYFRDQGKNVILMMDSLTRFSMAQREVGLAVGEPPVSRGYTPSVFAELPKLLERSGTSDKGSITGLYTVLVDGDDMNE
PIADTVRGILDGHIVLSRKIANRNHYPAIDVLASVSRVMPNIVEKKHLLIANEIKELLSTYNSSEDLINIGAYIKGTNRR
IDESINKIDSINSFLRQDVHDKTTLEDAITMMEEIVT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscN AAO18044.1 LscN Virulence TTSS locus Protein 8e-120 56
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 1e-102 51
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 1e-102 51
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 1e-104 51
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-104 51
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 1e-104 51
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 1e-104 51
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 8e-104 51
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 3e-104 51
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 4e-104 51
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 1e-94 51
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 4e-95 51
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 2e-95 51
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 3e-95 51
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 1e-94 51
unnamed ACU09458.1 type III secretion apparatus H+-transporting two-sector ATPase Virulence LEE Protein 3e-93 49
escN AAK26715.1 EscN Virulence LEE Protein 4e-94 49
escN NP_290268.1 hypothetical protein Virulence LEE Protein 4e-93 49
escN AAL57542.1 EscN Virulence LEE Protein 4e-94 49
ECs4568 NP_312595.1 EscN Virulence LEE Protein 4e-93 49
escN CAI43874.1 EscN protein Virulence LEE Protein 3e-94 49
escN YP_003236088.1 translocator EscN Virulence LEE Protein 9e-94 49
escN CAC81862.1 EscN protein Virulence LEE II Protein 2e-94 49
escN YP_003223475.1 translocator EscN Virulence LEE Protein 4e-94 49
escN YP_003232153.1 T3SS structure protein EscN Virulence LEE Protein 3e-94 49
escN AAC31513.1 L0034 Virulence LEE Protein 3e-93 49
escN AAC38383.1 EscN Virulence LEE Protein 2e-93 49
unnamed AAL06369.1 EscN Virulence LEE Protein 7e-93 49
escN AFO66300.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 1e-92 48
escN AFO66415.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 1e-92 48
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 4e-98 48
hrcN AAR25633.1 type III secretion cytoplasmic ATPase HrcN Not tested Not named Protein 4e-82 46
hrcN AAB06001.1 HrcN Virulence Hrp PAI Protein 1e-92 46
hrcN AAG33879.1 HrcN Virulence Hrp PAI Protein 4e-82 45
hrcN AAT96195.1 HrcN Virulence T-PAI Protein 2e-84 45
hrcN AAT96141.1 HrcN Virulence T-PAI Protein 2e-84 45
hrcN NP_791227.1 type III secretion cytoplasmic ATPase HrcN Virulence Hrp PAI Protein 1e-83 45
hrcN ABA47275.1 HrcN Virulence S-PAI Protein 4e-90 45
hrcN AAT96299.1 HrcN Virulence S-PAI Protein 6e-85 43
hrcN AAT96339.1 HrcN Virulence S-PAI Protein 4e-85 43
hrcN AAT96258.1 HrcN Virulence S-PAI Protein 1e-84 43
hrcN ABQ88354.1 HrcN Virulence Hrp PAI Protein 4e-80 42
hrpJ4 AAA81942.1 HrpJ4 Virulence Hrp PAI Protein 4e-80 42
ECs3730 NP_311757.1 ATP synthase SpaL Not tested LIM Protein 2e-76 41
invC YP_217813.1 ATP synthase SpaL Virulence SPI-1 Protein 2e-75 41
spaI NP_457288.1 secretory apparatus ATP synthase (associated with virulence) Virulence SPI-1 Protein 2e-75 41
spaI NP_806497.1 ATP synthase SpaL Virulence SPI-1 Protein 2e-75 41
invC NP_461815.1 ATP synthase SpaL Virulence SPI-1 Protein 2e-75 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clos_1482 YP_001513022.1 flagellar protein export ATPase FliI VFG2144 Protein 8e-118 57
Clos_1482 YP_001513022.1 flagellar protein export ATPase FliI VFG0048 Protein 6e-115 55
Clos_1482 YP_001513022.1 flagellar protein export ATPase FliI VFG0390 Protein 2e-117 54
Clos_1482 YP_001513022.1 flagellar protein export ATPase FliI VFG0192 Protein 9e-117 54
Clos_1482 YP_001513022.1 flagellar protein export ATPase FliI VFG0515 Protein 2e-95 51
Clos_1482 YP_001513022.1 flagellar protein export ATPase FliI VFG1254 Protein 3e-105 50
Clos_1482 YP_001513022.1 flagellar protein export ATPase FliI VFG2331 Protein 1e-95 49
Clos_1482 YP_001513022.1 flagellar protein export ATPase FliI VFG0812 Protein 2e-93 49
Clos_1482 YP_001513022.1 flagellar protein export ATPase FliI VFG0730 Protein 1e-93 49
Clos_1482 YP_001513022.1 flagellar protein export ATPase FliI VFG2499 Protein 1e-94 47
Clos_1482 YP_001513022.1 flagellar protein export ATPase FliI VFG1778 Protein 3e-73 43
Clos_1482 YP_001513022.1 flagellar protein export ATPase FliI VFG1008 Protein 9e-76 42
Clos_1482 YP_001513022.1 flagellar protein export ATPase FliI VFG0555 Protein 1e-75 41