Gene Information

Name : Clos_1392 (Clos_1392)
Accession : YP_001512932.1
Strain : Alkaliphilus oremlandii OhILAs
Genome accession: NC_009922
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1503000 - 1503713 bp
Length : 714 bp
Strand : +
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: tte:TTE1633 response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain

DNA sequence : 
ATGAATCCAAAACAAAATAAAACAATACTGGTTGTTGATGATGAAGAGCATATTCTAGAGTTAATAAGATTTAATCTAGA
AAAAGAGGGGTATGATGTTCTCTTATGTGAAAATGGTGATGAATGTATTCCTATGATACAGAATAATAAGGTGGATTTAG
TAGTTTTAGATTTGATGCTACCTGGTATGGATGGCATTCAAATCTGTAAAAAACTCAATCGAATGGATGAATACGAAAAC
CTACCAATTATTATGCTAACTGCTAAAAGTGAGGAAACTGATAGAGTTTTAGGGCTGGAGCTGGGTGCAGACGATTATAT
AACGAAACCCTTCAGTGTTAGAGAGTTGATTGCTAGAATAAGAGCTGTATTAAGAAGAAGTGAAAGCAAGCAAGATAGTA
GTAGATATGAGAATAAAGAAAAGAGCATTGTGGTAAAGGATTTAATCATTGATGTTGAAGAGCATACGGTATCCATTGAT
GGTGTTTATGTGGAACTGACCCTGAAAGAATTTGAATTATTAAAAATGTTATCGGAAAACAGAGGAAAGGTATTGTCTAG
AAACTTATTATTGGATGAAATCTGGGGATATGAGTACTTTGGTGAAACAAGAACGGTAGACGTTCATATTCGCCATCTCC
GTAGAAAGATCGGGGATGATAAGTCCAATGAATATATTGAGACCATCAGAGGGATCGGATATAAGATGAAGTAG

Protein sequence : 
MNPKQNKTILVVDDEEHILELIRFNLEKEGYDVLLCENGDECIPMIQNNKVDLVVLDLMLPGMDGIQICKKLNRMDEYEN
LPIIMLTAKSEETDRVLGLELGADDYITKPFSVRELIARIRAVLRRSESKQDSSRYENKEKSIVVKDLIIDVEEHTVSID
GVYVELTLKEFELLKMLSENRGKVLSRNLLLDEIWGYEYFGETRTVDVHIRHLRRKIGDDKSNEYIETIRGIGYKMK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 6e-38 41
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 1e-37 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clos_1392 YP_001512932.1 two component transcriptional regulator HE999704.1.gene2815. Protein 1e-53 54
Clos_1392 YP_001512932.1 two component transcriptional regulator NC_002952.2859905.p0 Protein 2e-47 47
Clos_1392 YP_001512932.1 two component transcriptional regulator NC_012469.1.7685629. Protein 6e-49 47
Clos_1392 YP_001512932.1 two component transcriptional regulator NC_012469.1.7686381. Protein 2e-46 47
Clos_1392 YP_001512932.1 two component transcriptional regulator NC_007622.3794472.p0 Protein 2e-47 47
Clos_1392 YP_001512932.1 two component transcriptional regulator NC_003923.1003749.p0 Protein 2e-47 46
Clos_1392 YP_001512932.1 two component transcriptional regulator NC_002758.1121668.p0 Protein 2e-47 46
Clos_1392 YP_001512932.1 two component transcriptional regulator NC_009641.5332272.p0 Protein 2e-47 46
Clos_1392 YP_001512932.1 two component transcriptional regulator NC_013450.8614421.p0 Protein 2e-47 46
Clos_1392 YP_001512932.1 two component transcriptional regulator NC_007793.3914279.p0 Protein 2e-47 46
Clos_1392 YP_001512932.1 two component transcriptional regulator NC_002745.1124361.p0 Protein 2e-47 46
Clos_1392 YP_001512932.1 two component transcriptional regulator NC_009782.5559369.p0 Protein 2e-47 46
Clos_1392 YP_001512932.1 two component transcriptional regulator NC_002951.3237708.p0 Protein 2e-47 46
Clos_1392 YP_001512932.1 two component transcriptional regulator NC_014475.1.orf0.gen Protein 9e-43 45
Clos_1392 YP_001512932.1 two component transcriptional regulator NC_005054.2598277.p0 Protein 9e-43 45
Clos_1392 YP_001512932.1 two component transcriptional regulator AE016830.1.gene1681. Protein 2e-46 45
Clos_1392 YP_001512932.1 two component transcriptional regulator CP004022.1.gene1676. Protein 1e-34 43
Clos_1392 YP_001512932.1 two component transcriptional regulator AE000516.2.gene3505. Protein 7e-37 42
Clos_1392 YP_001512932.1 two component transcriptional regulator AF155139.2.orf0.gene Protein 2e-40 42
Clos_1392 YP_001512932.1 two component transcriptional regulator FJ349556.1.orf0.gene Protein 1e-42 42
Clos_1392 YP_001512932.1 two component transcriptional regulator AE015929.1.gene1106. Protein 8e-34 41
Clos_1392 YP_001512932.1 two component transcriptional regulator HE999704.1.gene1528. Protein 5e-36 41
Clos_1392 YP_001512932.1 two component transcriptional regulator AM180355.1.gene1830. Protein 3e-36 41
Clos_1392 YP_001512932.1 two component transcriptional regulator DQ212986.1.gene4.p01 Protein 3e-36 41
Clos_1392 YP_001512932.1 two component transcriptional regulator BAC0125 Protein 7e-33 41
Clos_1392 YP_001512932.1 two component transcriptional regulator CP001918.1.gene5135. Protein 2e-30 41
Clos_1392 YP_001512932.1 two component transcriptional regulator CP000034.1.gene2186. Protein 1e-35 41
Clos_1392 YP_001512932.1 two component transcriptional regulator BAC0039 Protein 1e-35 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clos_1392 YP_001512932.1 two component transcriptional regulator VFG1563 Protein 4e-38 41
Clos_1392 YP_001512932.1 two component transcriptional regulator VFG1702 Protein 4e-38 41