Gene Information

Name : Franean1_6736 (Franean1_6736)
Accession : YP_001510976.1
Strain : Frankia sp. EAN1.pec
Genome accession: NC_009921
Putative virulence/resistance : Virulence
Product : RNA-directed DNA polymerase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3344
EC number : -
Position : 8192612 - 8193865 bp
Length : 1254 bp
Strand : -
Note : PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: pde:Pden_4539 RNA-directed DNA polymerase (reverse transcriptase)

DNA sequence :
GTGAGTGGACCAGCATCGCGGGGAAAGTCGTTTGAGATCCCCAAACAGCTGGTGTGGGATGCCTGGCTGAAAGTGAAGGA
AAACGGTGGGGCACCGGGGCCCGACGGAGTGACGGTCGAGCAGTTCGAGGCGAACGTGAAGGATCGCCTGTACGTGCTGT
GGAACCGCATGTCGTCGGGGTCGTACTTCCCCGGACCCGTCGGAGCGGTGGAGATCCCGAAGAAAGGTGTGAAAGGAGGA
GCAAGAACCCTCGGCATTCCCAATGTAGTAGATCGCGTAGCGCAGACGGTGCTAAAGCTGGCTCTGGAGCCGAAGGTCGA
GCCGGTGTTCCACCGGGACTCGTACGGCTACAGACCAGGCCGTTCGCAGCGCCAGGCGCTCGAGGTCTGCCGGAAGCGGT
GCTGGTCGCACGACTGGGTCGTTGACTTGGACGTGCGGAAGTTCTTCGACACCGTGCCGTGGGAAAAGCTGCTGAAGGCG
GTGGCGTACCACACGGACCAGAAATGGGTCCTGATGTACGTGGAACGCTGTCTGAAAGCGCCGACGAAGCATGCCGACGG
AACCCTGCAAGAGAGAACCATGGGCACAGTCCAGGGTGGCCCATTCTCCCCGCTGGCGGCTAACATCTATCTGCACTGGG
GCCTTGACGCCTGGATGGCGCGCGAGTTCCCGACCGTTCCATTCGAGCGGTGGGCGGACGATGTTGTGTTTCACTGTGTG
AGCCTGGAACAGGCCAGGGAAGTGCGGGACGCGGTGGTGGCAAGGCTTGTCGAAGTCGGGTTGGAAGCTCACCCCGACAA
GACCCGGATCGTGTACTGCAAGGACAGCAACCGAGGTGGCGACTATGAAAACACGTCGTTCACGTTCCTGTCGTATACCT
TCAGGCCACGAGTGGCATGGAACGGCACCCAGAAGAAACGCTTCACCAGCTTCATCCCGGGTGCCGCGCCGGATCGGGTG
GCCTCGTTCAGCCGCGAAATGCGCGACCTGAGGCTGCACAGGCGAACGAACCTGACACTGGATCAACTCGCCGCGGACAT
CAACCCGAAAGTGGCGGGTTGGCTAGAATATTTCACCATGTTCTACCCGAGCGTGGTGCTACCCATCGGCACGCGCATTG
ACAGCCATCTCGTGCGCTGGGCGAGGAAGAAGTACAAACGGCTGACACGAAGTGAGCGTAGGGCGTGGGCATGGCTCAAG
GGAGTCCGGGAACGGTCCCCTGACCTGTTTGCGCACTGGGCGTTGCGGTACTGA

Protein sequence :
MSGPASRGKSFEIPKQLVWDAWLKVKENGGAPGPDGVTVEQFEANVKDRLYVLWNRMSSGSYFPGPVGAVEIPKKGVKGG
ARTLGIPNVVDRVAQTVLKLALEPKVEPVFHRDSYGYRPGRSQRQALEVCRKRCWSHDWVVDLDVRKFFDTVPWEKLLKA
VAYHTDQKWVLMYVERCLKAPTKHADGTLQERTMGTVQGGPFSPLAANIYLHWGLDAWMAREFPTVPFERWADDVVFHCV
SLEQAREVRDAVVARLVEVGLEAHPDKTRIVYCKDSNRGGDYENTSFTFLSYTFRPRVAWNGTQKKRFTSFIPGAAPDRV
ASFSREMRDLRLHRRTNLTLDQLAADINPKVAGWLEYFTMFYPSVVLPIGTRIDSHLVRWARKKYKRLTRSERRAWAWLK
GVRERSPDLFAHWALRY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed ABR13526.1 reverse transcriptase Not tested PAGI-7 Protein 8e-95 50
unnamed CAD33771.1 putative reverse transcriptase Not tested PAI I 536 Protein 2e-72 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Franean1_6736 YP_001510976.1 RNA-directed DNA polymerase VFG1512 Protein 1e-72 41