Gene Information

Name : Franean1_5948 (Franean1_5948)
Accession : YP_001510198.1
Strain : Frankia sp. EAN1.pec
Genome accession: NC_009921
Putative virulence/resistance : Virulence
Product : ABC transporter-like protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 7251771 - 7252763 bp
Length : 993 bp
Strand : +
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tfu:Tfu_0336 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components

DNA sequence : 
GTGACCCCAGCCGACGCGGTAGCCCCGGCCGGTGCGGCGGCTCCGGGGCAGGCGGGGGGACCCGGCCGGTCCGGGGAGGC
CCGGCTGCGCGCCGAGAACCTCACGCTGGCCTATGAGCAGCGCGTCGTCGCCACCGGTCTCGGGCTGCAGATCCCGGACA
ACTCCTTTACCGTGATCGTCGGGCCGAACGCCTGCGGCAAGTCGACGCTGCTGCGCGCGCTGGCCCGCATGCTGCGCCCA
CGCACCGGCGCCGTGTACCTCGACGGGGCACTGATCCGGTCACTGCCGTCCAAGGAGGTGGCCCGCCGGCTCGGGCTGCT
CCCGCAGACGTCGATCGCGCCGAGCGGCATCTTCGTCTCCGACCTGGTCGCGCGGGGGCGGTACCCACACCAGCGGCTGC
TTCGCCAGTGGTCCCGCGACGACGAGGCGGCGGTGCGCGAGGCACTGGCCGCAACCGGGACCGACGACCTCGCCGACCGG
TACGTCGACGAGCTCTCCGGTGGGCAGCGCCAGCGGGTCTGGCTCGCGATGGCGCTGGCCCAGCAGACACCGATCATGCT
TCTGGACGAGCCAACGACGTTCCTCGACGTGGCCCACCAGATCGAGATCCTCGATCTCTGCGCCGACCTGCACGAGGATT
CCGCCCGCACGCTGGTGGCCGTCCTGCACGACCTCAACCACGCCTGCCGGTACGCGACCCACCTGGTGGCGATGAAGGGC
GGGCGGATCGTCGAGCAGGGAGTCCCGAACGAGATCGTCACCGCCGAGCTCGTCGAGGAGGTCTTCGGGCTGCCGTGCAG
CGTGGTTCCCGACCCCGAGACCGGAACTCCGCTCGTCGTGCCCGCCTCCCGCGCCCGGCGCCGGCAGCTCGCCGGGCGCG
CGAACGAGCACGACGGGACGGCCGCCTATGCCGCTTCGGAGGCAGAGACGACGGACGCGACGAAGGCGACCGAAGCCGCG
GATGCCGCGGCGATGACTGTCGGCGCCGGCTGA

Protein sequence : 
MTPADAVAPAGAAAPGQAGGPGRSGEARLRAENLTLAYEQRVVATGLGLQIPDNSFTVIVGPNACGKSTLLRALARMLRP
RTGAVYLDGALIRSLPSKEVARRLGLLPQTSIAPSGIFVSDLVARGRYPHQRLLRQWSRDDEAAVREALAATGTDDLADR
YVDELSGGQRQRVWLAMALAQQTPIMLLDEPTTFLDVAHQIEILDLCADLHEDSARTLVAVLHDLNHACRYATHLVAMKG
GRIVEQGVPNEIVTAELVEEVFGLPCSVVPDPETGTPLVVPASRARRRQLAGRANEHDGTAAYAASEAETTDATKATEAA
DAAAMTVGAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 8e-59 54
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 8e-59 54
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 8e-59 54
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 8e-59 54
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 4e-52 49
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 3e-45 46
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 6e-50 43
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 6e-50 43
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 9e-41 43
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 4e-41 42
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 4e-41 42
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 4e-41 42
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 4e-41 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Franean1_5948 YP_001510198.1 ABC transporter-like protein BAC0164 Protein 2e-45 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Franean1_5948 YP_001510198.1 ABC transporter-like protein VFG0925 Protein 2e-68 59
Franean1_5948 YP_001510198.1 ABC transporter-like protein VFG1042 Protein 2e-45 46