Gene Information

Name : Franean1_0190 (Franean1_0190)
Accession : YP_001504563.1
Strain : Frankia sp. EAN1.pec
Genome accession: NC_009921
Putative virulence/resistance : Virulence
Product : ATPase
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0542
EC number : -
Position : 233346 - 235850 bp
Length : 2505 bp
Strand : -
Note : PFAM: UvrB/UvrC protein; AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: fal:FRAAL6680 ATP-dependent protease, HSP 100, part of multi-ch

DNA sequence :
ATGTTCGAGAGGTTCACCGACCGGGCACGTCGGGTCGTCGTCCTGGCCCAAGAAGAGGCCAGGATGCTCAACCACAACTA
CATCGGGACCGAGCACATCCTGCTCGGCCTGATCCACGAGGGCGAGGGCGTCGCCGCTAAGGCCCTCGAGTCGCTCGGGA
TCTCGCTCGAGGGTGTGCGGTCACAGGTCGAGGAGATCATCGGGCAGGGTCAGCAGGCGCCGAGCGGGCACATCCCGTTC
ACGCCCCGGGCCAAGAAGGTCCTCGAGCTGTCCCTGCGTGAGGCTCTCCAGCTCGGCCACAACTACATCGGCACCGAGCA
CATTCTGCTCGGCCTGATCCGCGAGGGCGAGGGCGTCGCCGCCCAGGTGCTGGTCAAGCTCGGCGCGGACCTCAACCGGG
TCCGTCAGCAGGTCATCCAGCTCCTGTCCGGCTACCAGGGCAAGGGTGACCCGGCGACCGCCGGCGCCCCGGCCGAGGGA
ACGCCGTCGACCTCGCTGGTCCTCGACCAGTTCGGCCGCAACCTCACCGCGGCCGCTCGTGAGTCCAAGCTCGACCCGGT
CATCGGGCGCGAGAAGGAGATCGAGCGCGTCATGCAGGTGCTGTCGCGCCGGACGAAGAACAACCCCGTCCTGATCGGCG
AGCCCGGCGTCGGCAAGACCGCCGTCGTCGAGGGGCTCGCGCAGGCGATCGTCAAGGGCGAGGTCCCCGAGACCCTGAAG
GACAAGCAGCTCTACACCCTCGACCTCGGCGCGCTCGTCGCCGGGTCCCGCTACCGCGGTGACTTCGAGGAGCGGCTGAA
GAAGGTCCTCAAGGAGATCCGCACCCGCGGCGACATCATCCTGTTCATCGACGAGCTCCACACGCTCGTCGGTGCGGGTG
CCGCCGAGGGCGCGATCGACGCCGCCTCCATCCTCAAGCCCATGCTGGCGCGCGGGGAGCTGCAGACGATCGGCGCGACC
ACGCTGGACGAGTACCGCAAGCACCTGGAGAAGGACGCCGCTCTCGAGCGGCGGTTCCAGCCGATCCAGGTCGCGGAGCC
GTCGGTGGCGCACACCATCGAGATCCTCAAGGGCCTGCGCGACCGGTACGAGGCGCACCACCGCGTCTCGATCACCGACG
CCGCCCTGGTGGCCGCGGCCTCCCTGGCCGACCGCTACATCTCCGACCGGTTCCTGCCGGACAAGGCCATCGATCTGATC
GACGAGGCCGGCTCCCGGATGCGCATCCGCCGGATGACCGCTCCGCCGGACCTGCGGGAGTTCGACGAGCGCATCGCGAA
CGTCCGCCGGGACAAGGAGTCCGCGATCGACGCGCAGGACTTCGAGAAGGCCGCGTCGCTGCGCGACAAGGAGAAGACCC
TGCTGGCCGAGAAGGCCAAGCGGGAGAAGGAGTGGAAGGCCGGCGACATGGACGTCGTCGCCGAGGTCGGCGACGAGGAG
ATCGCGGAGGTCCTCGCGATCTGGACCGGCATCCCGGTCTTCAAGCTCACCGAGGAGGAGACCGCGCGTCTGCTCCGCAT
GGAGGACGAGCTCCACCGCCGGGTCATCGGCCAGGAGCAGGCCATCAAGGCCGTCTCCCAGGCGATCCGGCGCACCCGCG
CCGGGCTGAAGGACCCGAAGCGCCCCGGCGGCTCGTTCATCTTCGCCGGCCCGTCCGGTGTCGGTAAGACGGAGCTGTCG
AAGACGCTGGCGGAGTTCCTCTTCGGCGACGAGGACTCGCTCATCCAGCTCGACATGTCCGAGTACATGGAGAAGCACAC
CGTCTCGCGGCTGGTGGGCTCCCCGCCCGGCTACGTCGGGTACGAGGAGGGCGGCCAGCTCACCGAGCGGGTGCGGCGCA
AGCCGTTCTCCGTGGTCCTCTTCGACGAGGTCGAGAAGGCCCACCCGGACGTCTTCAACACGCTCCTGCAGATCCTGGAG
GACGGTCGCCTGACCGACTCCCAGGGCCGGCTGGTCGACTTCAAGAACACCGTTCTGATCATGACGTCGAACCTGGGCAC
CCGGGACATCTCCAAGGGCCCCGGCATCGGGTTCGCCACCGGCCAGGGCGCGGTCGACTACGAGCGGATGAAGGCGAAGG
TCCAGGACGAGCTCAAGCAGCACTTCCGGCCTGAGTTCCTCAACCGGATCGACGACATCATCGTCTTCCACCAGCTCTCC
GAGAACGAGATCATCCAGATCGTGGATCTCATGCTCGCCCGGGTCGACAGCCAGCTGAAGAACAAGGACATGGCGCTGGA
GCTCACGCCGGCCGCCAAGGCCCTGCTCGCCAAGCGTGGCTACGACCCGGTGCTCGGCGCCCGGCCACTGCGCCGGACGA
TCCAGCGGGAGATCGAGGACATCCTGTCCGAGAAGATCCTGTACGGGACGCTGCGTCCCGGCGAGATCGTGGTCGGCGAC
GTCGAGGGTGAGGGCGAGGAGGCGAAGTTCGTCTTCCGCGGCGAGCCGAAGCCGAACTCGGTGCCGGACTCCCCGCCGAT
CGACCTCGCCAAGTCCAGCGAGTGA

Protein sequence :
MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEGVRSQVEEIIGQGQQAPSGHIPF
TPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYQGKGDPATAGAPAEG
TPSTSLVLDQFGRNLTAAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIVKGEVPETLK
DKQLYTLDLGALVAGSRYRGDFEERLKKVLKEIRTRGDIILFIDELHTLVGAGAAEGAIDAASILKPMLARGELQTIGAT
TLDEYRKHLEKDAALERRFQPIQVAEPSVAHTIEILKGLRDRYEAHHRVSITDAALVAAASLADRYISDRFLPDKAIDLI
DEAGSRMRIRRMTAPPDLREFDERIANVRRDKESAIDAQDFEKAASLRDKEKTLLAEKAKREKEWKAGDMDVVAEVGDEE
IAEVLAIWTGIPVFKLTEEETARLLRMEDELHRRVIGQEQAIKAVSQAIRRTRAGLKDPKRPGGSFIFAGPSGVGKTELS
KTLAEFLFGDEDSLIQLDMSEYMEKHTVSRLVGSPPGYVGYEEGGQLTERVRRKPFSVVLFDEVEKAHPDVFNTLLQILE
DGRLTDSQGRLVDFKNTVLIMTSNLGTRDISKGPGIGFATGQGAVDYERMKAKVQDELKQHFRPEFLNRIDDIIVFHQLS
ENEIIQIVDLMLARVDSQLKNKDMALELTPAAKALLAKRGYDPVLGARPLRRTIQREIEDILSEKILYGTLRPGEIVVGD
VEGEGEEAKFVFRGEPKPNSVPDSPPIDLAKSSE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 0.0 76

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Franean1_0190 YP_001504563.1 ATPase VFG0079 Protein 0.0 63
Franean1_0190 YP_001504563.1 ATPase VFG0080 Protein 2e-148 53