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Name : Spea_0085 (Spea_0085) Accession : YP_001499949.1 Strain : Shewanella pealeana ATCC 700345 Genome accession: NC_009901 Putative virulence/resistance : Virulence Product : sigma-54 dependent trancsriptional regulator Function : - COG functional category : T : Signal transduction mechanisms COG ID : COG2204 EC number : - Position : 94655 - 95962 bp Length : 1308 bp Strand : - Note : PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: shw:Sputw3181_0461 sigma54 specific transcriptional regulator, fis family DNA sequence : ATGAATCCTTCTAGTTTAAGATTTGTCGATGCAGATCTAACCCTATCTTGCCAAAATAGACTGGTTCAACAGGGCTTTAA TTTATACTTGCCTGATGATAAAGATAGCCCTTGGTTAAGTTTGATCAACCTTTCTCATTGCGCGAGTCAGGATGTACCCG TACGGCTACGACAATTTCCAGGTAAGCACCAAGTCGCCCTGCTCAATCCAGAGCAAACCGAGCTTGCCAGTATCGCCATG CAGTGTGGTGTACAAGATTACCTGTTACTGCCAATTGATGCAGAGCAACTGTGCTCACTACTACAAAGATTACGTCGTTT AGAACTGCCCAATAATGAGTTAATTTGCGCGGCTCCGGTTAGCCGCCAGCTGCTAATGCTAGCTCACCGAGCTGCGAGCA CAGAGGCCACAGTACTACTCACCGGCGAAAGCGGCACAGGTAAAGAGCCGCTAGCTCGTTATATTCACCGCCATTCCAAC CGTGCCGATAAGGCTTTTATCGCAATCAACTGCGCAGCTATTCCTGAAAGCATTCTAGAATCTATCCTGTTTGGTCACAT CAAGGGGGCATTTACGGGTGCCACAACCGACCAGCCCGGTAAGTTCGAACTCGCCAACGGCGGAACGTTACTGCTCGATG AAATCGGTGAGATGCCTCTGCTTTTACAAGCCAAACTACTGCGTGTACTGCAAGAGAGAGAGGTTGAGCGATTAGGCAGT CACAGGTCAATTGCGTTAGATATTCGGGTCATTGCCGCCACCAACAAAGATCTGCGTCAAGCGGTGCAAGATGGCAAATT CAGAGAAGACCTCTTCTATCGCTTAGATGTACTGCCGATAAAGATATTACCACTGCGTCAGAGACGCGAAGACATTCTGC CCATTGCCGAACATTTTCTACAGCGATACAAAATTCTTGCGGCAAATCAGCAATGCTACTTCAGTGAGCAGGCTCGAAAC TTACTGTTAAGCCACAACTGGCCCGGCAATGTGCGCGAACTAGAAAATACCATCCAACGCGCGCTGGTTATGCGACGTGG TCAAGCATTACAAGCCGAAGATCTCGGCCTCGAAAATCAAGACGGTTCAATCTTAGTAGAACAAAATGAGTTAGGGCTTA AGGCCTCTAAACGTCAGGCTGAGTTCCAATACATTATTGACACGCTTAAGCGCCACAACGGCCATAGGATCCAAACGGCT GAGGCCTTGGGAATGACGACACGAGCATTGCGATACAAGCTGGCTCAAATGCGAGAAGAAGGGATCGATATTGAACGCCT CCTCGCTCAAGCAGGTCATGCTGCGTAA Protein sequence : MNPSSLRFVDADLTLSCQNRLVQQGFNLYLPDDKDSPWLSLINLSHCASQDVPVRLRQFPGKHQVALLNPEQTELASIAM QCGVQDYLLLPIDAEQLCSLLQRLRRLELPNNELICAAPVSRQLLMLAHRAASTEATVLLTGESGTGKEPLARYIHRHSN RADKAFIAINCAAIPESILESILFGHIKGAFTGATTDQPGKFELANGGTLLLDEIGEMPLLLQAKLLRVLQEREVERLGS HRSIALDIRVIAATNKDLRQAVQDGKFREDLFYRLDVLPIKILPLRQRREDILPIAEHFLQRYKILAANQQCYFSEQARN LLLSHNWPGNVRELENTIQRALVMRRGQALQAEDLGLENQDGSILVEQNELGLKASKRQAEFQYIIDTLKRHNGHRIQTA EALGMTTRALRYKLAQMREEGIDIERLLAQAGHAA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrpR | AAT96162.1 | HrpR | Virulence | T-PAI | Protein | 3e-38 | 41 |
| hrpR | AAT96216.1 | HrpR | Virulence | T-PAI | Protein | 3e-38 | 41 |
| hrpS | AAD24684.1 | sigma-54-dependent enhancer-binding protein HrpS | Virulence | Hrp PAI | Protein | 8e-34 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Spea_0085 | YP_001499949.1 | sigma-54 dependent trancsriptional regulator | VFG1249 | Protein | 2e-72 | 53 |
