Gene Information

Name : Spea_0080 (Spea_0080)
Accession : YP_001499944.1
Strain : Shewanella pealeana ATCC 700345
Genome accession: NC_009901
Putative virulence/resistance : Virulence
Product : FliI/YscN family ATPase
Function : -
COG functional category : N : Cell motility
COG ID : COG1157
EC number : -
Position : 89366 - 90703 bp
Length : 1338 bp
Strand : -
Note : KEGG: sbl:Sbal_3976 ATPase, FliI/YscN family; TIGRFAM: ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; SMART: AAA ATPase

DNA sequence :
ATGAGGCTGACGTTGAAATTTAACGCCGACATTTTAGATTGGCCTAAGGTTCCCGTCGCGCAAGTATACGGACGACTCAC
TCGAGTCAACGGCTTATTACTTGAGGCGGTTGGATGCCAGCTGGGCACCGGGGACAGATGTCACATAGAATGTCGTGATA
AACAATTGGTAGAAGCCGAAGTCGTTGGCTTCTACAAAGACACCCTATGCTTAATGCCTATCGAAGCGGCATCTGGGTTA
ATGCCTGGTGCTCGAGTCATGCCTATTGAAGGCCGATGCCTTATTCCTTCAGGCCTAGGCATTCTCGGCCGCGTGCTCGA
CGGCTTAGGCCAGCCATTAGACGGACTCGGCTGCATTAAGCACTTACCTCATGTGCCACTACAGCATAAACCCACCAACC
CCTTAATGCGTAAAGCCATTGAAGAACCATTGGATGTTGGGATAAGAGCCATCAATGCCCTACTCCCTATCGGCCGTGGC
CAGCGCCTAGGCCTTTTTGCCGGTTCAGGTGTCGGTAAAAGTGTGCTGTTAGGCATGATGACCCGCTTTACTGAAGCCGA
TGTTGTGGTAGTAGGTCTAATAGGTGAACGTGGCCGAGAGGTCAAAGAATTTATCGATGAGTCACTAGGTGAAGAGGGAC
GCAAGCGAGCGGTCGTCATTGCAGCCCCAGCCGATACCACACCACTGATGCGAATGCGCGCAATGCGTTTATGCCACCAC
ATTGCCGCCACCTATCGCGACCAAGGTAAACAAGTATTACTGCTGGTAGACTCCTTAACTCGATACGCACAGGCCCAGCG
TGAGATTGCGCTGAGTCTAGGTGAGCCACCAGCAACCAAGGGCTATCCCCCTTCAGCTTTTGCTCAACTCCCCAGTTTGG
TGGAGATGGCGGGTAATGGTCAGCACCCTACGGGCACACTTACCGCGTTTTACACCGTATTAACCGAAGGTGATGATCAG
CAAGATCCTATCGCCGACTCAGCTCGTGCAATCTTAGATGGCCATATTGTCTTGAGCCGTAAACTTGCAGAGAAAGGTCA
CTTCCCCGCCATAGATATTGGCGCGTCAGTGAGCCGACTGGCAACCAAAGTCGCCAGTGAAGAAACCCTCAAGCAAGGCC
AGTGGTTTCGGCATCTGAATAGCCGTTATAACGAGGTAAAAGATCTATTGCCACTGGGGGGTTATCAAGCGGGTCACGAT
CCAGAGATGGATATGGCGGTGAGCGCTTACCCTAAAATGGCTGAGTTTTTACGTCAAAGTACCAACTCACAAGCCGATCA
TGCCCATAGCATCACGGCCTTAGCGCAATTAGTCAGCAACATGGGATATTCATTGTAG

Protein sequence :
MRLTLKFNADILDWPKVPVAQVYGRLTRVNGLLLEAVGCQLGTGDRCHIECRDKQLVEAEVVGFYKDTLCLMPIEAASGL
MPGARVMPIEGRCLIPSGLGILGRVLDGLGQPLDGLGCIKHLPHVPLQHKPTNPLMRKAIEEPLDVGIRAINALLPIGRG
QRLGLFAGSGVGKSVLLGMMTRFTEADVVVVGLIGERGREVKEFIDESLGEEGRKRAVVIAAPADTTPLMRMRAMRLCHH
IAATYRDQGKQVLLLVDSLTRYAQAQREIALSLGEPPATKGYPPSAFAQLPSLVEMAGNGQHPTGTLTAFYTVLTEGDDQ
QDPIADSARAILDGHIVLSRKLAEKGHFPAIDIGASVSRLATKVASEETLKQGQWFRHLNSRYNEVKDLLPLGGYQAGHD
PEMDMAVSAYPKMAEFLRQSTNSQADHAHSITALAQLVSNMGYSL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 2e-68 47
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 2e-68 47
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 1e-68 45
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 4e-69 45
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 1e-68 45
lscN AAO18044.1 LscN Virulence TTSS locus Protein 9e-74 45
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 6e-75 45
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 6e-75 45
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 4e-72 44
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 3e-77 44
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-77 44
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 4e-78 44
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 2e-77 44
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 9e-78 44
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 3e-78 44
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 3e-78 44
ECs4568 NP_312595.1 EscN Virulence LEE Protein 1e-64 44
escN AAC38383.1 EscN Virulence LEE Protein 8e-65 44
escN CAI43874.1 EscN protein Virulence LEE Protein 8e-65 44
escN YP_003236088.1 translocator EscN Virulence LEE Protein 1e-64 44
escN AAC31513.1 L0034 Virulence LEE Protein 7e-65 44
escN YP_003232153.1 T3SS structure protein EscN Virulence LEE Protein 1e-64 44
unnamed ACU09458.1 type III secretion apparatus H+-transporting two-sector ATPase Virulence LEE Protein 7e-65 44
escN YP_003223475.1 translocator EscN Virulence LEE Protein 1e-64 44
escN NP_290268.1 hypothetical protein Virulence LEE Protein 1e-64 44
escN CAC81862.1 EscN protein Virulence LEE II Protein 1e-64 44
hrcN AAB06001.1 HrcN Virulence Hrp PAI Protein 5e-69 43
hrcN ABA47275.1 HrcN Virulence S-PAI Protein 1e-67 43
escN AAK26715.1 EscN Virulence LEE Protein 3e-64 43
escN AAL57542.1 EscN Virulence LEE Protein 3e-64 43
unnamed AAL06369.1 EscN Virulence LEE Protein 5e-63 43
hrcN AAG33879.1 HrcN Virulence Hrp PAI Protein 1e-60 42
hrcN AAR25633.1 type III secretion cytoplasmic ATPase HrcN Not tested Not named Protein 8e-63 42
hrcN NP_791227.1 type III secretion cytoplasmic ATPase HrcN Virulence Hrp PAI Protein 3e-62 42
hrcN ABQ88354.1 HrcN Virulence Hrp PAI Protein 8e-62 42
hrpJ4 AAA81942.1 HrpJ4 Virulence Hrp PAI Protein 8e-62 42
escN AFO66300.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 5e-63 42
escN AFO66415.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 5e-63 42
hrcN AAT96195.1 HrcN Virulence T-PAI Protein 8e-65 41
hrcN AAT96141.1 HrcN Virulence T-PAI Protein 8e-65 41
hrcN AAT96339.1 HrcN Virulence S-PAI Protein 9e-64 41
hrcN AAT96299.1 HrcN Virulence S-PAI Protein 6e-64 41
hrcN AAT96258.1 HrcN Virulence S-PAI Protein 5e-64 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Spea_0080 YP_001499944.1 FliI/YscN family ATPase VFG1254 Protein 2e-115 59
Spea_0080 YP_001499944.1 FliI/YscN family ATPase VFG2331 Protein 1e-103 59
Spea_0080 YP_001499944.1 FliI/YscN family ATPase VFG2499 Protein 1e-103 56
Spea_0080 YP_001499944.1 FliI/YscN family ATPase VFG0390 Protein 1e-72 46
Spea_0080 YP_001499944.1 FliI/YscN family ATPase VFG0515 Protein 6e-69 45
Spea_0080 YP_001499944.1 FliI/YscN family ATPase VFG0192 Protein 5e-76 45
Spea_0080 YP_001499944.1 FliI/YscN family ATPase VFG0048 Protein 3e-76 44
Spea_0080 YP_001499944.1 FliI/YscN family ATPase VFG0812 Protein 4e-65 44
Spea_0080 YP_001499944.1 FliI/YscN family ATPase VFG0730 Protein 5e-65 44
Spea_0080 YP_001499944.1 FliI/YscN family ATPase VFG2144 Protein 1e-76 41