Gene Information

Name : Spea_4110 (Spea_4110)
Accession : YP_001503955.1
Strain : Shewanella pealeana ATCC 700345
Genome accession: NC_009901
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 4997234 - 4997911 bp
Length : 678 bp
Strand : -
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: slo:Shew_0097 two component transcriptional regulator, winged helix family

DNA sequence : 
ATGAAAATACTCATGGTTGAAGATGACGCGACTACCATCGAATATGTCGTAAAGGGATTTGTTGAGCAAGGGCACAATAT
AGAAACTGCGACAGACGGCCATCAAGGTTTGTTGCTTGCAACCAGCATGAAGTACGACTTAATCATTTTAGATCGTATGT
TGCCACAGCTAGATGGCTTGAAGTTGTTAGCGGCGCTACGCGCTACTGGCAGTCAAACGCCAGTATTGATCTTATCTGCG
TTAAGCCATGTCGATGAGCGAGTAAAAGGACTACGTGCGGGTGGTGATGACTACATGACCAAGCCTTTCGCCTTCTCTGA
GCTGTTGGTTCGTGCCGAGAAGTTGATGCAGCGTGGTGAATCACAGCCAGCGGTTACCGACCTTAATGTGGGTCCGTTAA
CTATAGAGTTGTTGACTCGTAAAGTGACTCTCGATGGGCAAGAAATCTTACTGCAGCCAAAAGAGTTTCAGCTACTTAAA
TACCTGATGGAACATGTTAATCAGGTAATTAGTCGCACCCTGCTTTTTGAAGCTGTGTGGGATTATCACTTCGATCCTCG
TACCAATGTCATCGATGTGCATATCGCCAAACTGAGACGTAAGTTTGAAGAGCTAGGCCACGGTGAATTAATCGAAACTG
TTCGAGGTGCTGGGTATCGGTTACGCCAAGGGCATTAA

Protein sequence : 
MKILMVEDDATTIEYVVKGFVEQGHNIETATDGHQGLLLATSMKYDLIILDRMLPQLDGLKLLAALRATGSQTPVLILSA
LSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGESQPAVTDLNVGPLTIELLTRKVTLDGQEILLQPKEFQLLK
YLMEHVNQVISRTLLFEAVWDYHFDPRTNVIDVHIAKLRRKFEELGHGELIETVRGAGYRLRQGH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-40 45
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-39 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Spea_4110 YP_001503955.1 two component transcriptional regulator BAC0347 Protein 4e-45 45
Spea_4110 YP_001503955.1 two component transcriptional regulator BAC0083 Protein 1e-41 45
Spea_4110 YP_001503955.1 two component transcriptional regulator BAC0111 Protein 3e-46 45
Spea_4110 YP_001503955.1 two component transcriptional regulator BAC0308 Protein 3e-42 44
Spea_4110 YP_001503955.1 two component transcriptional regulator BAC0197 Protein 1e-39 44
Spea_4110 YP_001503955.1 two component transcriptional regulator BAC0125 Protein 3e-40 43
Spea_4110 YP_001503955.1 two component transcriptional regulator BAC0638 Protein 5e-39 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Spea_4110 YP_001503955.1 two component transcriptional regulator VFG0596 Protein 4e-41 45
Spea_4110 YP_001503955.1 two component transcriptional regulator VFG1389 Protein 4e-37 45