Gene Information

Name : Spea_1522 (Spea_1522)
Accession : YP_001501382.1
Strain : Shewanella pealeana ATCC 700345
Genome accession: NC_009901
Putative virulence/resistance : Virulence
Product : dihydrodipicolinate synthetase
Function : -
COG functional category : E : Amino acid transport and metabolism
COG ID : COG0329
EC number : -
Position : 1849545 - 1850450 bp
Length : 906 bp
Strand : -
Note : PFAM: dihydrodipicolinate synthetase; KEGG: pha:PSHAb0156 N-acetylneuraminate lyase (aldolase)

DNA sequence : 
ATGCAAAAACTAACTGGGTTAATCGCAGCACCACATACTCCATTTGATATTAATGGTGATGTTAATCTGCCTGTTATCGA
TCAAATTGCCGCACTGCTCATCAAACAAAATGTTAAAGGTGTTTATATTTGCGGCACAACAGGCGAAGGCCTCAATTGCT
CCGTCAATGAGCGAAAAGCGGTGGCAGAGCGCTGGGTTAAGGCCGCACAAGGTAAACTAAGTATTACAGTTCATACTGGC
GCTCTATCAATTGTTGACACGCTAGAACTAACTAAGCACGCCGATACTCTTGATGTATTTGCAACATCCGTTATTGCACC
TTGCTTTTTTAAACCCAGTTCAGTCGATTGCCTTGTCAAATACTGCGCAACCGTCGCGGCCGCGGCGCCAAGTAAAGCTT
TTTATTACTACCACTCAGGAATGTCGAATGTCATGTTTGATATGGAACAGTTTCTTATCAAAGCAGATAAAGTCATCGAT
AACCTTGCAGGTATAAAATTTAACCATGTCGATTTATATGAGTTTCAGCGCTGTAAGCGAGTAGCCAATGGTAAATTCGA
TATTCCATTTGGTGTCGATGAGTCACTGCCAGGCGGGCTCGCAGTAGGCGCTATCGGCGCTGTTGGTAGTACCTATAATT
ACGCAGCCTCGCTGTATTTGGACATAATTGATGCGTTTAACAAAGGAGAGCAACAAACTGTCACTCGCTTAATGAATAAA
GTTATTGGCCTTATTCGACCTCTTGTGCAATATGGCGGAGTCGCGGCGGGGAAAGCGGCGATGCAACTGCATGGGATTGA
TGTTGGCGATCCTCGTATGCCAATTCGAGCCCTATCACCACAAGAAAAAGAAGATGTCATAGTGAAAATGAAAGCCGCCG
GCTTTATGGAGCATACAGCTTCATAA

Protein sequence : 
MQKLTGLIAAPHTPFDINGDVNLPVIDQIAALLIKQNVKGVYICGTTGEGLNCSVNERKAVAERWVKAAQGKLSITVHTG
ALSIVDTLELTKHADTLDVFATSVIAPCFFKPSSVDCLVKYCATVAAAAPSKAFYYYHSGMSNVMFDMEQFLIKADKVID
NLAGIKFNHVDLYEFQRCKRVANGKFDIPFGVDESLPGGLAVGAIGAVGSTYNYAASLYLDIIDAFNKGEQQTVTRLMNK
VIGLIRPLVQYGGVAAGKAAMQLHGIDVGDPRMPIRALSPQEKEDVIVKMKAAGFMEHTAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1776 NP_231411.1 N-acetylneuraminate lyase Not tested VPI-2 Protein 1e-101 72
VC0395_A1374 YP_001217317.1 dihydrodipicolinate synthetase family protein Not tested VPI-2 Protein 1e-101 72
VPI2_0024c ACA01841.1 dihydrodipicolinate synthase/N-acetylneuraminate lyase Not tested VPI-2 Protein 8e-102 72

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Spea_1522 YP_001501382.1 dihydrodipicolinate synthetase VFG1109 Protein 4e-102 72