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Name : Spea_1416 (Spea_1416) Accession : YP_001501276.1 Strain : Shewanella pealeana ATCC 700345 Genome accession: NC_009901 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein CapD Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 1718393 - 1720336 bp Length : 1944 bp Strand : + Note : PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: sbl:Sbal_2876 polys DNA sequence : ATGGACTTTTTGCAGTGCTTGTTTTCATTAAAACGAGTGGAAAAACGAATAGTTAGCGTATTAATTGACTCGTTATTTTT ATTGATAGCGTTTTGGGGAGCAGTTCTTGTCCGTGTTGATGATATCAGTACGCTGACGAATGGCTCATATTGGTTACTTA TTGCAAGTGTGGTGCCGCTTAGTATTCTAGGTTTTGCAAAACTGGGGCTATATCGTGCTGTGTTGCGTTATATGGGGTTG CAAGCACTGAGCGCTATTTTATTGGGCGTAGTCGTATCTACGGTCAGTTTAGTATTGGCCGCTTATTATTTCGATTCACA ACTTCCTAGAACCGTACCGGTTATTTACTCTGCATTTGCACTGGTTTTTATTGGTGGCACGCGTACGATGGTGCGCGCTT TTGTTGGCACGGGAATGAAGCGCATCGGTGAGCCAGTGATTATATATGGTGCAGGAGTGAGTGGTCGCCAACTGGTAACG GCGTTAGTACAAAGCCACGAATATTATCCGTTTGCCTTTGTCGACGACGATAAGTCATTGCATGGCACTGTCATTCAAGG TGTACACGTGCATTCACCATCGATTATGCGTAAGCTCATAAGAGAAAAGCAGGCGACCAAGGTGCTGCTAGCACTGCCTA GCGCGTCGCGTTCGCGCCGCAAAGAGATTTTATTATCATTAGAACAACTCGCTGTGCAGGTACTCACCTTACCGGCCATG GCCGATCTAGTTAGTGGTAATAAGCTTTATAGTGATATTAAAGAAGTCGAGATTGATGATCTTCTCGGTCGCGACAGTGT TAGACCTCGTGATGATTTAATGACTGCTAATATCAAAAATAAAGTGGTGATGGTGACAGGCGCGGGTGGGTCTATAGGTT CGGAGTTATGTCGACAGATTATTAAGCAATCGCCAAGGAAACTGGTGTTATTTGAGCTGTCTGAGTTTGGATTATATTCA ATAGAGCGTGAGCTATCAGCTTTGGCTTCAGGGCTTGGGCTAGATGTTGAAATCTACCCAATGTTGGGTTCTGTACAGAG AAAGAACCGTATAAAGGCTGTTATGGAAGCGTTTGAGGTGCAAACTGTTTACCATGCGGCTGCTTATAAACACGTGCCGT TAGTTGAACATAACGTAGTAGAAGGTGTGCGTAACAATGTGTTTGGTACGCTTTATACCGCACAAGCTGCAATAGCGGCA AAAGTGGAAACATTTGTACTTATTTCTACTGATAAAGCCGTTCGCCCAACCAATGTAATGGGCACGACTAAACGCCTAGC AGAGCTCGCGTTGCAAGCATTAGCGAACGAATCGCATTCAACACGTTTTTGTATGGTGCGTTTTGGTAATGTGCTTGGCT CATCGGGTTCTGTAGTGCCATTGTTTAGAAAGCAGATTGCAGCTGGCGGTCCTGTTACGGTAACGCATCCTGAGATCACC CGCTTTTTCATGACGATCCCGGAAGCGTCTCAATTGGTGATTCAAGCTGGAGCGATGGGCAAAGGCGGAGATGTGTTTGT TTTGGACATGGGCAGTTCAGTTAAAATTGTCGATCTTGCCGCAAAAATGATCCGTTTAAGTGGCTTTGATGTTAAGGATG ATATTAATCCTGAAGGTGATATTAGCATCGAATATAGTGGCCTTCGTCCAGGCGAAAAGCTTTATGAAGAGCTGTTAATT GGCGATGACGTGACCGGTACGAATCACGAACGCATTATGACTGCCAATGAATTATGTTTACCTTGGCATGAGCTTGAAGT TATCCTTAAGCGACTCGATGCAGCTTGTCATGAGTTCCAGCATGAAGCGATCAGGGAGATCTTACTGAGTGCTCCTACCG GTTTTAATCCTACTGATGGCATATGTGATTTAGTGTGGCAACAACGTGAAAGTGAGCCTCAGCAGAGTATTAAAGAGGAA AATGTGCTTTCTATTGTTTCTTAA Protein sequence : MDFLQCLFSLKRVEKRIVSVLIDSLFLLIAFWGAVLVRVDDISTLTNGSYWLLIASVVPLSILGFAKLGLYRAVLRYMGL QALSAILLGVVVSTVSLVLAAYYFDSQLPRTVPVIYSAFALVFIGGTRTMVRAFVGTGMKRIGEPVIIYGAGVSGRQLVT ALVQSHEYYPFAFVDDDKSLHGTVIQGVHVHSPSIMRKLIREKQATKVLLALPSASRSRRKEILLSLEQLAVQVLTLPAM ADLVSGNKLYSDIKEVEIDDLLGRDSVRPRDDLMTANIKNKVVMVTGAGGSIGSELCRQIIKQSPRKLVLFELSEFGLYS IERELSALASGLGLDVEIYPMLGSVQRKNRIKAVMEAFEVQTVYHAAAYKHVPLVEHNVVEGVRNNVFGTLYTAQAAIAA KVETFVLISTDKAVRPTNVMGTTKRLAELALQALANESHSTRFCMVRFGNVLGSSGSVVPLFRKQIAAGGPVTVTHPEIT RFFMTIPEASQLVIQAGAMGKGGDVFVLDMGSSVKIVDLAAKMIRLSGFDVKDDINPEGDISIEYSGLRPGEKLYEELLI GDDVTGTNHERIMTANELCLPWHELEVILKRLDAACHEFQHEAIREILLSAPTGFNPTDGICDLVWQQRESEPQQSIKEE NVLSIVS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 2e-79 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Spea_1416 | YP_001501276.1 | polysaccharide biosynthesis protein CapD | VFG0029 | Protein | 2e-115 | 49 |
