Name : smpB (Spea_1282) Accession : YP_001501144.1 Strain : Shewanella pealeana ATCC 700345 Genome accession: NC_009901 Putative virulence/resistance : Unknown Product : SsrA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 1566605 - 1567099 bp Length : 495 bp Strand : - Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : ATGGCTAAGAAAAACGCAAAAAATTCAAAGAACAGTTCAGCTTCCATTGCACGCAATAAGCGCGCAACTTTTGACTACAA GTTTGAAGAGAAGCTAGAAGCAGGCTTATCCCTAATGGGATGGGAAGTGAAGTCTATTCGCATGGGCAAGGTAAACTTGT CTGAGAGCTATGTGTTTCTAAGAGAAGGCGAAGCTTATCTTTTTGGTTGCACCATCGCACCACTTAATACTGCATCTTCC CATGTAGTATGTGACCCGCTACGCTCGCGCAAGCTACTACTAAAACGTAAAGAGCTTGATAAACTTCAAGGCTTAGTTGA CCGTAAAGGTTACTCAATCGTACCTATCTCTATGTATTGGCAGAAAGGCGCTTGGGTTAAAATTGAAATCGGTTTAGGTA AAGGTAAGAAAGAACACGATAAGCGCGACGATACTAAAGATCGCGAATGGCAAATTGAAAAGGCTCGTACCATAAAGAAG GCGGTACAGCAGTAA Protein sequence : MAKKNAKNSKNSSASIARNKRATFDYKFEEKLEAGLSLMGWEVKSIRMGKVNLSESYVFLREGEAYLFGCTIAPLNTASS HVVCDPLRSRKLLLKRKELDKLQGLVDRKGYSIVPISMYWQKGAWVKIEIGLGKGKKEHDKRDDTKDREWQIEKARTIKK AVQQ |
Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
smpB | NP_230495.1 | SsrA-binding protein | Not tested | VPI-1 | Protein | 1e-22 | 53 |