Gene Information

Name : Spea_1259 (Spea_1259)
Accession : YP_001501121.1
Strain : Shewanella pealeana ATCC 700345
Genome accession: NC_009901
Putative virulence/resistance : Virulence
Product : DNA repair protein RadC
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2003
EC number : -
Position : 1530156 - 1530632 bp
Length : 477 bp
Strand : -
Note : PFAM: DNA repair protein RadC; KEGG: shm:Shewmr7_1776 DNA repair protein RadC

DNA sequence : 
ATGCCCGAAAAATTATTAGTTCCTCACCATATAACCTGGCCCAAAACAACTAGTGAAATTCTAGCCACTGCTGCCAATAT
CATTGCTGAAAAGTTTGTTCATAACGATGCCTTCACCAATCCCGAAGCAACCAAGCAGTTTTTGACCTACAAGATGGCCA
ATTACGAGCGTGAGGTATTTGCGGTGATGATGCTCGATAACCAACATCGGCTGATTGAATTCAATGAGCTGTTTTTTGGC
ACCGTAGATGCCGCCAGCGTCTATCCAAGAGAAGTGGTAAAAGCCGTGTTAGCAGTTAATGCCGCAGCGGTTATCTTGGC
CCACAATCATCCATCTGGTGAAGCAGAGCCCTCTCAAGCTGACAAACTGATCACTAAGCGTTTAACGGATGCATTGGCTC
TGATCGATGTACGAGTACTCGATCATATAGTGGTAGGTAAAACACCAGTGTCATTTACTGAACGTGGCTTGCTATAG

Protein sequence : 
MPEKLLVPHHITWPKTTSEILATAANIIAEKFVHNDAFTNPEATKQFLTYKMANYEREVFAVMMLDNQHRLIEFNELFFG
TVDAASVYPREVVKAVLAVNAAAVILAHNHPSGEAEPSQADKLITKRLTDALALIDVRVLDHIVVGKTPVSFTERGLL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0510 NP_230161.1 DNA repair protein RadC-like protein Not tested VSP-2 Protein 8e-38 70
VC0395_A1383 YP_001217326.1 DNA repair protein RadC Not tested VPI-2 Protein 2e-37 65
VC1786 NP_231421.1 DNA repair protein RadC Not tested VPI-2 Protein 2e-37 65
VPI2_0034 ACA01849.1 DNA repair protein RadC Not tested VPI-2 Protein 1e-37 65
unnamed AAK00479.1 unknown Not tested SHI-1 Protein 1e-22 57
yeeS NP_838484.1 RADC family DNA repair protein Not tested SHI-1 Protein 2e-22 57
yeeS CAE85201.1 YeeS protein Not tested PAI V 536 Protein 2e-22 57
yeeS NP_708770.1 RADC family DNA repair protein Not tested SHI-1 Protein 2e-22 57
unnamed CAD42098.1 hypothetical protein Not tested PAI II 536 Protein 2e-22 56
ECO103_3589 YP_003223446.1 radC-like protein YeeS Not tested LEE Protein 6e-22 56
unnamed CAD66203.1 hypothetical protein Not tested PAI III 536 Protein 2e-22 56
Z1217 NP_286752.1 RadC family DNA repair protein Not tested TAI Protein 5e-22 56
z1217 CAD33787.1 Z1217 protein Not tested PAI I 536 Protein 3e-22 56
yeeS YP_854323.1 radC-like protein YeeS Not tested PAI I APEC-O1 Protein 2e-22 56
yeeS AAZ04458.1 putative RadC-like protein Not tested PAI I APEC-O1 Protein 1e-22 56
c5152 NP_757000.1 radC-like protein yeeS Not tested PAI II CFT073 Protein 2e-22 56
aec73 AAW51756.1 Aec73 Not tested AGI-3 Protein 2e-22 56
unnamed AAL67345.1 intergenic-region protein Not tested PAI II CFT073 Protein 2e-22 56
yeeS CAI43901.1 YeeS protein Not tested LEE Protein 2e-22 56
yeeS CAI43846.1 YeeS protein Not tested LEE Protein 3e-22 56
yeeS ADD91702.1 YeeS Not tested PAI-I AL862 Protein 3e-22 56
unnamed AAL08475.1 unknown Not tested SRL Protein 3e-22 56
Z1657 NP_287160.1 RadC family DNA repair protein Not tested TAI Protein 2e-21 55
radC AAN62140.1 putative DNA repair protein RadC Not tested PAGI-2(C) Protein 7e-22 44
radC AAN62275.1 putative DNA repair protein RadC Not tested PAGI-3(SG) Protein 1e-17 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Spea_1259 YP_001501121.1 DNA repair protein RadC VFG1119 Protein 5e-38 65
Spea_1259 YP_001501121.1 DNA repair protein RadC VFG0660 Protein 6e-23 57
Spea_1259 YP_001501121.1 DNA repair protein RadC VFG1617 Protein 8e-23 56
Spea_1259 YP_001501121.1 DNA repair protein RadC VFG1678 Protein 8e-23 56
Spea_1259 YP_001501121.1 DNA repair protein RadC VFG1528 Protein 1e-22 56
Spea_1259 YP_001501121.1 DNA repair protein RadC VFG1066 Protein 1e-22 56