Gene Information

Name : fliP (Abu_0995)
Accession : YP_001489924.1
Strain : Arcobacter butzleri RM4018
Genome accession: NC_009850
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 1000190 - 1000915 bp
Length : 726 bp
Strand : -
Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus

DNA sequence : 
TTGAGAATTATTTTTACTGTACTACTTTTTTCTATTTTTGCAAATGCAGCAGATGCACCAATGATAAATCTATCGGTTGC
TGCAATAGAACAACCAGTACAATTCGTAAGAACAATAAATATCGCAATTATTTTAGCACTATTAGTTTTAGCACCAACAC
TTTTACTGATGGTTACTTCTTTTACAAGACTTATTATTGTATTTTCACTTTTAAGACAAGCTATGGGATTACAACAAACT
CCACCTTCTCAAATAATAATCTCTTTATCTCTTATTTTAACTATTTTTATCATGGAACCTTATGCAAAAAAAGCTTGGGA
TGATGCAATAGTTCCATATATGGATGAAAAAATTGGTTATGAAGTAGCTTTTGATAAAGGTGTTGCACCTTTCAAAGAAT
TTATGATTAAAAATACAAGAGAAGCTGATTTAGCACTATTTTATAGAATAAAAAAAGAGCCAAATCCTAAAAATATAGAA
GCTGTTCCTCTTACTTTACTTATGCCAGCTTTTATTGTTAGTGAATTAAGAACTGCTTTTGAAATAGGTTTTTTAATCTT
TTTACCATTTTTAGTTATTGATATTATCGTTGCTTCAATTTTAATGAGTTTAGGTATGATGATGTTACCACCTGTTATGA
TATCCTTGCCTATTAAAATAATTTTCTTTATAGTCGTAGATGGATGGCAACTCATAATTGGAAATCTTGCACAATCATTT
AAATAA

Protein sequence : 
MRIIFTVLLFSIFANAADAPMINLSVAAIEQPVQFVRTINIAIILALLVLAPTLLLMVTSFTRLIIVFSLLRQAMGLQQT
PPSQIIISLSLILTIFIMEPYAKKAWDDAIVPYMDEKIGYEVAFDKGVAPFKEFMIKNTREADLALFYRIKKEPNPKNIE
AVPLTLLMPAFIVSELRTAFEIGFLIFLPFLVIDIIVASILMSLGMMMLPPVMISLPIKIIFFIVVDGWQLIIGNLAQSF
K

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
escR AAK26700.1 EscR Virulence LEE Protein 3e-23 42
escR AAL57527.1 EscR Virulence LEE Protein 3e-23 42
escR CAC81847.1 EscR protein Virulence LEE II Protein 3e-23 42
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 4e-23 42
escR CAI43889.1 EscR protein Virulence LEE Protein 3e-23 42
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-22 42
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 4e-23 42
unnamed AAL06354.1 EscR Virulence LEE Protein 2e-23 42
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-22 42
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 4e-23 42
escR AAC38369.1 EscR Virulence LEE Protein 2e-22 42
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 4e-23 42
escR AAC31528.1 L0049 Virulence LEE Protein 3e-23 42
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 4e-23 42
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 3e-23 42
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 4e-25 41
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 2e-25 41
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 2e-25 41
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 2e-25 41
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 4e-25 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_001489924.1 flagellar biosynthesis protein FliP VFG2494 Protein 5e-44 57
fliP YP_001489924.1 flagellar biosynthesis protein FliP VFG2338 Protein 6e-43 56
fliP YP_001489924.1 flagellar biosynthesis protein FliP VFG1259 Protein 4e-43 55
fliP YP_001489924.1 flagellar biosynthesis protein FliP VFG2016 Protein 1e-41 52
fliP YP_001489924.1 flagellar biosynthesis protein FliP VFG0827 Protein 2e-23 42
fliP YP_001489924.1 flagellar biosynthesis protein FliP VFG0715 Protein 1e-22 42
fliP YP_001489924.1 flagellar biosynthesis protein FliP VFG0519 Protein 9e-26 41