Gene Information

Name : Abu_0339 (Abu_0339)
Accession : YP_001489283.1
Strain : Arcobacter butzleri RM4018
Genome accession: NC_009850
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein/permease
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1132
EC number : -
Position : 337365 - 339158 bp
Length : 1794 bp
Strand : -
Note : Pfam matches to PF00005 ABC_tran, score 210.6, E-value 3.3E-060, and to PF00664 ABC_membrane, score 36.2, E-value 2.2E-009

DNA sequence :
ATGAAAAAACAAAAAGTAGGACTTTGGGCTATTATGTCCCCAGTTAAATTCAAAATTAGATTAGCTATGTTATTAGCTAG
TATTGGTGCGATAAGTTTGATTTCAAGTTTATTACTTCTTTCTCTTACCTTATCAAATATTTTAATTAACACTCCTTTGA
TTATTTTTTGTATTGAATTGGATTTAATCAAAACTATACTTTTATTAGCAATTCTAACAATTATCGCTTTTGTATCAAGA
TTAGCAGGATTTATAGTTTCACATTTAGGAGCTTTTCACTTAGAACAAATATTAAGAACAAACTTATCACAACATTTAGC
AACCGTTCCTTTAGGATATATTATCTCAAATGGTTCAGGAACTTTAAAAAAAGTTATGCAAGATGATGTAAAAACTTTAC
ATACTTTTGTTGCTGATAGTACACCAATGATTGCAAAAAGTATAGTTGCCCCAATAAGTACTTTAATCATACTTTTGATT
ATTGATTATAGATTTGCTCTTGCAACTCTTAGTGTATTTATTTTAGGTTGGATTACTATGGCATTTTCCATGAGAGATTC
AAAAACTTTACGAATAAAATATGAAAAAAGTCAATCAAATATAAATAAAGCTGTTATTGAGTTTGCTCAAGCTATGCCAG
TTGTACGAACTTTTGATGATGGAACAACTTCATTTAAAAGATATAACGATGCTTTATTGGAATATAAAACAAACCTTCAA
CATTGGATGAATATAAGTGCTTTTAGTGCAAAACTTGGAATGATTATTTTAAGTCCACTTCCTACACTAATTGCCGTTCT
TATTACTGGTATTTATCTTTTAAATTTTGGAACTCTTGAATTATTTGCATTTATAAGCGCCCTATTTTTAAGTACAGGTA
TGGCAGATGCAATGATGCCACTTATGTGGATAAATAACCATATAAAAAAATCTCAAGCATCAGCACTTAGAATTCAAGAA
GTTTTAGAAATAAAATCTCTTGAAATTCCAAAAGAGACAAAAACTATAAAAACCTATGACATTGAATTTGAAAATGTATC
TTTTAAATATGACAGCGTTGAAAAATATGCTTTAAAAAATATAAGTTTCAAGGCAAAAGAAGGAAGTGTTACTGCGCTCG
TTGGTCCAAGTGGCGCGGGCAAAAGTACAGTTGCAAAACTAATTCCTAGATTTTGGGATGTAACTAGTGGTGAAATAAAA
ATTGGTGATGTTAATATAAAAGAACTAAGTAGTGAAACTTTGATGAACACAGTCTCTTTCGTATTTCAAGATACTTTTTT
ATTTCAAGATACAATTTATAATAACATCAAAATGGCAAATGAAAAAGCAACTAAAGAAGATATAGTAAATGCTTGTAAAG
CTGCACAAATTCATGATTTTATACAGAGTCTACCAGATGGTTATGAAACACTTGCAGGAGATAGAGGAACAAATCTTTCA
GGTGGACAAAAACAAAGAATCACAATAGCAAGAGCAATTTTAAGAAATACTCCAATTATTGTTTTAGATGAAGCAACAGC
TTTTGCAGACCCTGAAAATGAAGAAGAGATAGTAAAAGCATTAGCAAATTTAACTATAAATAAAACAGTTATTATGATAG
CTCATCGTCTTTCTACTATAAAAGATTCTGATCAAATTATTGTATTTGATGAAGGAAAAATATCAGAAATTGGAAAACAT
GATGAACTTTTAGAGAAACAAGGTATCTATTCAAAACTTTGGAGCAACTATGAAAAAGCTAGTTCTTGGAACCTAGAAAA
AATAGAAGATAAAAAAGGAAAAAACAATGTATAA

Protein sequence :
MKKQKVGLWAIMSPVKFKIRLAMLLASIGAISLISSLLLLSLTLSNILINTPLIIFCIELDLIKTILLLAILTIIAFVSR
LAGFIVSHLGAFHLEQILRTNLSQHLATVPLGYIISNGSGTLKKVMQDDVKTLHTFVADSTPMIAKSIVAPISTLIILLI
IDYRFALATLSVFILGWITMAFSMRDSKTLRIKYEKSQSNINKAVIEFAQAMPVVRTFDDGTTSFKRYNDALLEYKTNLQ
HWMNISAFSAKLGMIILSPLPTLIAVLITGIYLLNFGTLELFAFISALFLSTGMADAMMPLMWINNHIKKSQASALRIQE
VLEIKSLEIPKETKTIKTYDIEFENVSFKYDSVEKYALKNISFKAKEGSVTALVGPSGAGKSTVAKLIPRFWDVTSGEIK
IGDVNIKELSSETLMNTVSFVFQDTFLFQDTIYNNIKMANEKATKEDIVNACKAAQIHDFIQSLPDGYETLAGDRGTNLS
GGQKQRITIARAILRNTPIIVLDEATAFADPENEEEIVKALANLTINKTVIMIAHRLSTIKDSDQIIVFDEGKISEIGKH
DELLEKQGIYSKLWSNYEKASSWNLEKIEDKKGKNNV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
irp6 CAB46573.1 lipoprotein inner membrane ABC-transporter, Irp6 Virulence HPI Protein 2e-115 48
ybtP YP_070126.1 lipoprotein inner membrane ABC-transporter Virulence HPI Protein 6e-115 48
ybtP NP_669704.1 permease and ATP-binding protein of yersiniabactin-iron ABC transporter Virulence HPI Protein 2e-115 48
ybtP NP_993009.1 permease and ATP-binding protein of yersiniabactin-iron ABC transporter Virulence HPI Protein 2e-115 48
irp6 YP_002346904.1 lipoprotein inner membrane ABC transporter Not tested HPI Protein 2e-115 48
ybtP CAA21388.1 - Virulence HPI Protein 2e-115 48
ybtP YP_853073.1 inner membrane ABC-transporter Not tested PAI IV APEC-O1 Protein 2e-115 48
irp6 YP_001006813.1 lipoprotein inner membrane ABC-transporter Not tested HPI Protein 9e-116 48
smi_1698 YP_003446800.1 multidrug ABC transporter ATPase/permease Not tested The aminoglycoside resistance gene cluster Protein 2e-101 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Abu_0339 YP_001489283.1 ABC transporter ATP-binding protein/permease BAC0432 Protein 9e-116 48