|
Name : Abu_0339 (Abu_0339) Accession : YP_001489283.1 Strain : Arcobacter butzleri RM4018 Genome accession: NC_009850 Putative virulence/resistance : Resistance Product : ABC transporter ATP-binding protein/permease Function : - COG functional category : V : Defense mechanisms COG ID : COG1132 EC number : - Position : 337365 - 339158 bp Length : 1794 bp Strand : - Note : Pfam matches to PF00005 ABC_tran, score 210.6, E-value 3.3E-060, and to PF00664 ABC_membrane, score 36.2, E-value 2.2E-009 DNA sequence : ATGAAAAAACAAAAAGTAGGACTTTGGGCTATTATGTCCCCAGTTAAATTCAAAATTAGATTAGCTATGTTATTAGCTAG TATTGGTGCGATAAGTTTGATTTCAAGTTTATTACTTCTTTCTCTTACCTTATCAAATATTTTAATTAACACTCCTTTGA TTATTTTTTGTATTGAATTGGATTTAATCAAAACTATACTTTTATTAGCAATTCTAACAATTATCGCTTTTGTATCAAGA TTAGCAGGATTTATAGTTTCACATTTAGGAGCTTTTCACTTAGAACAAATATTAAGAACAAACTTATCACAACATTTAGC AACCGTTCCTTTAGGATATATTATCTCAAATGGTTCAGGAACTTTAAAAAAAGTTATGCAAGATGATGTAAAAACTTTAC ATACTTTTGTTGCTGATAGTACACCAATGATTGCAAAAAGTATAGTTGCCCCAATAAGTACTTTAATCATACTTTTGATT ATTGATTATAGATTTGCTCTTGCAACTCTTAGTGTATTTATTTTAGGTTGGATTACTATGGCATTTTCCATGAGAGATTC AAAAACTTTACGAATAAAATATGAAAAAAGTCAATCAAATATAAATAAAGCTGTTATTGAGTTTGCTCAAGCTATGCCAG TTGTACGAACTTTTGATGATGGAACAACTTCATTTAAAAGATATAACGATGCTTTATTGGAATATAAAACAAACCTTCAA CATTGGATGAATATAAGTGCTTTTAGTGCAAAACTTGGAATGATTATTTTAAGTCCACTTCCTACACTAATTGCCGTTCT TATTACTGGTATTTATCTTTTAAATTTTGGAACTCTTGAATTATTTGCATTTATAAGCGCCCTATTTTTAAGTACAGGTA TGGCAGATGCAATGATGCCACTTATGTGGATAAATAACCATATAAAAAAATCTCAAGCATCAGCACTTAGAATTCAAGAA GTTTTAGAAATAAAATCTCTTGAAATTCCAAAAGAGACAAAAACTATAAAAACCTATGACATTGAATTTGAAAATGTATC TTTTAAATATGACAGCGTTGAAAAATATGCTTTAAAAAATATAAGTTTCAAGGCAAAAGAAGGAAGTGTTACTGCGCTCG TTGGTCCAAGTGGCGCGGGCAAAAGTACAGTTGCAAAACTAATTCCTAGATTTTGGGATGTAACTAGTGGTGAAATAAAA ATTGGTGATGTTAATATAAAAGAACTAAGTAGTGAAACTTTGATGAACACAGTCTCTTTCGTATTTCAAGATACTTTTTT ATTTCAAGATACAATTTATAATAACATCAAAATGGCAAATGAAAAAGCAACTAAAGAAGATATAGTAAATGCTTGTAAAG CTGCACAAATTCATGATTTTATACAGAGTCTACCAGATGGTTATGAAACACTTGCAGGAGATAGAGGAACAAATCTTTCA GGTGGACAAAAACAAAGAATCACAATAGCAAGAGCAATTTTAAGAAATACTCCAATTATTGTTTTAGATGAAGCAACAGC TTTTGCAGACCCTGAAAATGAAGAAGAGATAGTAAAAGCATTAGCAAATTTAACTATAAATAAAACAGTTATTATGATAG CTCATCGTCTTTCTACTATAAAAGATTCTGATCAAATTATTGTATTTGATGAAGGAAAAATATCAGAAATTGGAAAACAT GATGAACTTTTAGAGAAACAAGGTATCTATTCAAAACTTTGGAGCAACTATGAAAAAGCTAGTTCTTGGAACCTAGAAAA AATAGAAGATAAAAAAGGAAAAAACAATGTATAA Protein sequence : MKKQKVGLWAIMSPVKFKIRLAMLLASIGAISLISSLLLLSLTLSNILINTPLIIFCIELDLIKTILLLAILTIIAFVSR LAGFIVSHLGAFHLEQILRTNLSQHLATVPLGYIISNGSGTLKKVMQDDVKTLHTFVADSTPMIAKSIVAPISTLIILLI IDYRFALATLSVFILGWITMAFSMRDSKTLRIKYEKSQSNINKAVIEFAQAMPVVRTFDDGTTSFKRYNDALLEYKTNLQ HWMNISAFSAKLGMIILSPLPTLIAVLITGIYLLNFGTLELFAFISALFLSTGMADAMMPLMWINNHIKKSQASALRIQE VLEIKSLEIPKETKTIKTYDIEFENVSFKYDSVEKYALKNISFKAKEGSVTALVGPSGAGKSTVAKLIPRFWDVTSGEIK IGDVNIKELSSETLMNTVSFVFQDTFLFQDTIYNNIKMANEKATKEDIVNACKAAQIHDFIQSLPDGYETLAGDRGTNLS GGQKQRITIARAILRNTPIIVLDEATAFADPENEEEIVKALANLTINKTVIMIAHRLSTIKDSDQIIVFDEGKISEIGKH DELLEKQGIYSKLWSNYEKASSWNLEKIEDKKGKNNV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ybtP | YP_070126.1 | lipoprotein inner membrane ABC-transporter | Virulence | HPI | Protein | 6e-115 | 48 |
| ybtP | NP_669704.1 | permease and ATP-binding protein of yersiniabactin-iron ABC transporter | Virulence | HPI | Protein | 2e-115 | 48 |
| ybtP | NP_993009.1 | permease and ATP-binding protein of yersiniabactin-iron ABC transporter | Virulence | HPI | Protein | 2e-115 | 48 |
| irp6 | YP_002346904.1 | lipoprotein inner membrane ABC transporter | Not tested | HPI | Protein | 2e-115 | 48 |
| ybtP | CAA21388.1 | - | Virulence | HPI | Protein | 2e-115 | 48 |
| ybtP | YP_853073.1 | inner membrane ABC-transporter | Not tested | PAI IV APEC-O1 | Protein | 2e-115 | 48 |
| irp6 | YP_001006813.1 | lipoprotein inner membrane ABC-transporter | Not tested | HPI | Protein | 9e-116 | 48 |
| irp6 | CAB46573.1 | lipoprotein inner membrane ABC-transporter, Irp6 | Virulence | HPI | Protein | 2e-115 | 48 |
| smi_1698 | YP_003446800.1 | multidrug ABC transporter ATPase/permease | Not tested | The aminoglycoside resistance gene cluster | Protein | 2e-101 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Abu_0339 | YP_001489283.1 | ABC transporter ATP-binding protein/permease | BAC0432 | Protein | 9e-116 | 48 |
