Gene Information

Name : yycF (BPUM_3689)
Accession : YP_001488893.1
Strain : Bacillus pumilus SAFR-032
Genome accession: NC_009848
Putative virulence/resistance : Virulence
Product : response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3656322 - 3657029 bp
Length : 708 bp
Strand : -
Note : -

DNA sequence : 
ATGGAAAAAAAGATTCTTGTCGTAGATGATGAAAAGCCGATTGCTGATATATTGGAGTTTAACTTAAGAAAAGAGGGCTA
TGAGGTTCATTGTGCATATGACGGCAATGAAGCCCTTGAAATGGTAGAAGAAATCAAACCAGACATTATTTTGCTAGACA
TCATGCTACCGAATAAAGATGGCGTTGAAGTATGCCGTGAAGTGAGAAAGAAATATGACATGCCGATTATCATGCTGACA
GCAAAAGACTCTGAAATTGATAAAGTCATCGGTCTTGAGCTTGGCGCAGATGATTATGTGACGAAGCCATTTAGCACGCG
CGAGCTGCTTGCCCGTGTGAAGGCGAATTTAAGAAGACAAATTGCTACGCCGCAGACAGAGGAAGAATCTGAATCAAATG
ATATTGAAATTGGATCACTTGTCATTTATCCAGATGCGTATGTGGTGTCTAAGCGCGAGGAAACGATTGAATTGACGCAC
CGTGAGTTCGAATTGCTTCATTACTTAGCGAAACATATCGGACAAGTGATGACACGTGAGCACTTGCTGCAAACCGTATG
GGGCTACGATTACTTCGGAGATGTCCGTACAGTAGACGTCACCGTCCGCCGTCTTCGTGAGAAAATTGAAGACAATCCTA
GTCACCCGAGCTGGATCGTGACAAGACGAGGCGTCGGCTACTATTTAAGAAACCCAGAGCAGGACTAA

Protein sequence : 
MEKKILVVDDEKPIADILEFNLRKEGYEVHCAYDGNEALEMVEEIKPDIILLDIMLPNKDGVEVCREVRKKYDMPIIMLT
AKDSEIDKVIGLELGADDYVTKPFSTRELLARVKANLRRQIATPQTEEESESNDIEIGSLVIYPDAYVVSKREETIELTH
REFELLHYLAKHIGQVMTREHLLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPSWIVTRRGVGYYLRNPEQD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 9e-32 43
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 8e-32 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yycF YP_001488893.1 response regulator NC_012469.1.7685629. Protein 1e-65 69
yycF YP_001488893.1 response regulator NC_007793.3914279.p0 Protein 3e-53 56
yycF YP_001488893.1 response regulator NC_003923.1003749.p0 Protein 2e-53 56
yycF YP_001488893.1 response regulator NC_002745.1124361.p0 Protein 3e-53 56
yycF YP_001488893.1 response regulator NC_009782.5559369.p0 Protein 3e-53 56
yycF YP_001488893.1 response regulator NC_002951.3237708.p0 Protein 3e-53 56
yycF YP_001488893.1 response regulator NC_002952.2859905.p0 Protein 3e-53 56
yycF YP_001488893.1 response regulator NC_002758.1121668.p0 Protein 3e-53 56
yycF YP_001488893.1 response regulator NC_007622.3794472.p0 Protein 2e-53 56
yycF YP_001488893.1 response regulator NC_009641.5332272.p0 Protein 3e-53 56
yycF YP_001488893.1 response regulator NC_013450.8614421.p0 Protein 3e-53 56
yycF YP_001488893.1 response regulator HE999704.1.gene2815. Protein 6e-48 53
yycF YP_001488893.1 response regulator NC_012469.1.7686381. Protein 5e-45 50
yycF YP_001488893.1 response regulator AE016830.1.gene1681. Protein 4e-45 48
yycF YP_001488893.1 response regulator FJ349556.1.orf0.gene Protein 1e-39 46
yycF YP_001488893.1 response regulator HE999704.1.gene1528. Protein 3e-32 45
yycF YP_001488893.1 response regulator AM180355.1.gene1830. Protein 7e-39 45
yycF YP_001488893.1 response regulator AF155139.2.orf0.gene Protein 2e-35 45
yycF YP_001488893.1 response regulator NC_005054.2598277.p0 Protein 9e-37 43
yycF YP_001488893.1 response regulator NC_014475.1.orf0.gen Protein 9e-37 43
yycF YP_001488893.1 response regulator CP001918.1.gene5135. Protein 3e-28 43
yycF YP_001488893.1 response regulator AE000516.2.gene3505. Protein 4e-37 43
yycF YP_001488893.1 response regulator NC_003923.1003417.p0 Protein 1e-34 43
yycF YP_001488893.1 response regulator NC_013450.8614146.p0 Protein 1e-34 43
yycF YP_001488893.1 response regulator NC_002951.3238224.p0 Protein 1e-34 43
yycF YP_001488893.1 response regulator NC_007793.3914065.p0 Protein 1e-34 43
yycF YP_001488893.1 response regulator NC_002758.1121390.p0 Protein 1e-34 43
yycF YP_001488893.1 response regulator NC_010079.5776364.p0 Protein 1e-34 43
yycF YP_001488893.1 response regulator NC_002952.2859858.p0 Protein 1e-34 43
yycF YP_001488893.1 response regulator NC_007622.3794948.p0 Protein 1e-34 43
yycF YP_001488893.1 response regulator BAC0039 Protein 3e-30 43
yycF YP_001488893.1 response regulator CP000034.1.gene2186. Protein 3e-30 43
yycF YP_001488893.1 response regulator NC_002695.1.916589.p Protein 3e-30 43
yycF YP_001488893.1 response regulator AF162694.1.orf4.gene Protein 3e-33 42
yycF YP_001488893.1 response regulator AF130997.1.orf0.gene Protein 6e-37 42
yycF YP_001488893.1 response regulator DQ212986.1.gene4.p01 Protein 1e-37 42
yycF YP_001488893.1 response regulator NC_002695.1.915041.p Protein 3e-32 42
yycF YP_001488893.1 response regulator CP000034.1.gene3834. Protein 3e-32 42
yycF YP_001488893.1 response regulator CP004022.1.gene3215. Protein 2e-36 42
yycF YP_001488893.1 response regulator AE015929.1.gene1106. Protein 5e-30 42
yycF YP_001488893.1 response regulator CP001138.1.gene2239. Protein 9e-29 42
yycF YP_001488893.1 response regulator BAC0596 Protein 9e-29 42
yycF YP_001488893.1 response regulator CP001918.1.gene3444. Protein 3e-29 42
yycF YP_001488893.1 response regulator BAC0125 Protein 4e-29 41
yycF YP_001488893.1 response regulator CP001485.1.gene721.p Protein 2e-28 41
yycF YP_001488893.1 response regulator CP000647.1.gene4257. Protein 1e-31 41
yycF YP_001488893.1 response regulator CP001138.1.gene4273. Protein 2e-31 41
yycF YP_001488893.1 response regulator BAC0533 Protein 1e-31 41
yycF YP_001488893.1 response regulator CP000647.1.gene2531. Protein 2e-28 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yycF YP_001488893.1 response regulator VFG1389 Protein 6e-30 44
yycF YP_001488893.1 response regulator VFG1563 Protein 5e-32 43
yycF YP_001488893.1 response regulator VFG1390 Protein 4e-36 42
yycF YP_001488893.1 response regulator VFG1702 Protein 3e-32 42