Gene Information

Name : znuB (P9215_06851)
Accession : YP_001483886.1
Strain : Prochlorococcus marinus MIT 9215
Genome accession: NC_009840
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 610108 - 610983 bp
Length : 876 bp
Strand : +
Note : COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]

DNA sequence :
ATGGAACTCTGTTCTTTTTTGACTTTTGATTCATTCATAACAGATCCTTTGACTCATAACTTTATGAGAAAAGCACTTCT
TATGAGTTCATTAGTTGCAGCGGTTTGTGGTTTTCTGTCAAGTTATTTGACTCTTAAAGGATGGGCTTTGATGGGAGATG
CAGTGTCACATTCGGTAATGCCTGGAGTTGTGGTTGCTTATGCATTAGGTCTTCCTTTCTCATTAGGGGCATTTATTTTT
GGAGTTGGGTCTGTTGCATTAATAGGGTTTATTAAGCAGAAATCAAGAGTTAAGGAAGATACTGTTATTGGGTTGGTATT
TACTGGGTTTTTCGCTCTTGGAATCGTATTGGTCTCTAAGATTAAAAGTAATATTGATTTGCACTCTATTCTTTTTGGTA
GTCCATTGGGAATATCACTTTCAGATGTAAAGCAAACTATATTCATTTCTTTGTTGGTAGTAATCCTTTTATCAATTTTT
AGAAAAGATTTAATGCTGTATTGCTTTGATCCTAGGCATGCAAAAACAGTTGGGATTAACGTATTATTTCTTCATTATTT
ACTCCTAACATGCTTATCTTTGGCAGCTGTTGTGGGCTTGCAGTCTGTTGGAATTATTTTGGTAGTTGCAATGTTGATTA
CACCTGGGGCTACAGCATATTTACTTACGGATAAGTTTAATAATATGACAGTAATTTCAGTATTAAGCGCAATTATCTCA
AGCCTGATAGGAATCTATGTTAGTTTTTGGTTTGATCTTGAAACAGGTGGATCAATTGTCTTGGCACAAACTTTTATATT
TTTATTCGCTTTTTTATTCGCTCCAAGATACGGAATCTTTAAGTTAAAGAAATTATTTGCTGATTATAAATGTTAG

Protein sequence :
MELCSFLTFDSFITDPLTHNFMRKALLMSSLVAAVCGFLSSYLTLKGWALMGDAVSHSVMPGVVVAYALGLPFSLGAFIF
GVGSVALIGFIKQKSRVKEDTVIGLVFTGFFALGIVLVSKIKSNIDLHSILFGSPLGISLSDVKQTIFISLLVVILLSIF
RKDLMLYCFDPRHAKTVGINVLFLHYLLLTCLSLAAVVGLQSVGIILVVAMLITPGATAYLLTDKFNNMTVISVLSAIIS
SLIGIYVSFWFDLETGGSIVLAQTFIFLFAFLFAPRYGIFKLKKLFADYKC

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 4e-46 45
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 2e-46 45
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 4e-46 45
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 4e-46 45
sitD NP_461785.1 permease Virulence SPI-1 Protein 2e-46 45
EF0576 NP_814341.1 cation ABC transporter permease Not tested Not named Protein 4e-43 43
ef0094 AAM75297.1 EF0094 Not tested Not named Protein 3e-43 43
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 5e-48 42
sitC NP_461784.1 permease Virulence SPI-1 Protein 5e-48 42
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 4e-48 42
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 4e-48 42
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 4e-48 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
znuB YP_001483886.1 ABC transporter BAC0441 Protein 3e-47 47
znuB YP_001483886.1 ABC transporter BAC0442 Protein 6e-54 47
znuB YP_001483886.1 ABC transporter BAC0352 Protein 1e-46 45
znuB YP_001483886.1 ABC transporter BAC0351 Protein 2e-48 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
znuB YP_001483886.1 ABC transporter VFG0528 Protein 9e-47 45
znuB YP_001483886.1 ABC transporter VFG0527 Protein 2e-48 42