|
Name : serS (C8J_0364) Accession : YP_001481940.1 Strain : Campylobacter jejuni 81116 Genome accession: NC_009839 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : 6.1.1.11 Position : 363381 - 364616 bp Length : 1236 bp Strand : + Note : catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA DNA sequence : ATGCTAGATTTAAAAAATTTGCAAAATAATTTTGATGAAGTGGCTAAAAAGTTAAAAAATAAAAAAGTTGATGAAAATAT CTTAAAAAAACTTGCTGAACTTTTTGCAAGTTTAAAAAAAGAAAAAACAGCTTTAGAAGAATTTCAAGCTTTTCAAAATA AATTCAGTAAAGAGCTTGCTACAGCCGAAGATAAAGAAAGTTTAAAAGCAAAATTAAGCGAAAATAAAAGCAAAATTAAT GAGCAAAGCGTTAAAGTAAATGCTTTAGAAAATGAGCTTGAAGAAATCGCTCATGCCATCCCAAATATTCCTGATGAATG TGTGCCTGTGGGTGAAGATGAAGATGAAAATGTGGAGCTTAAAAAAGTATTAAATCCGCCTAGCTTTGATTTTACTCCAA AAGAACATTTTGAATTAGGCGAGAGTTTAAATTGGCTTGATTTTGTGCGTGGGGTAAAAATTTCACAAAGCCGTTTTTGT GTGCTTAAGAACGAAGGAGCTTTATTAAGCCGTGCTTTGGTAAATTATATGATAGATTTTAATAGAAGTCATGGATTTGA GTTTGTTAATGTACCTTTTTTGGTAAATGGTGCTACTATGTTTGGGACGGGTCAGTTGCCAAAATTTAAAGAAGATATGT ATAAGGTAGATGATGAGGATTTGTATTTAATCTCAACTTCTGAAATTCCAGTAACCAATCTTTATAGTGGAGAAATTTTA GCGAGTGAAACTTTACCTATAAAAATGACTTGTTATAGCGCTTGTTTTAGAAAAGAAGCAGGTAGTGCAGGGCGTGATAC AAGAGGTATTATCAGACAACACCAGTTTGAAAAAGTAGAGCTTGTAAGTATCACTAAACCTGAGCAAAGTGATAGTGTGT TTAATGAAATGCTTGAGTGTGCAAGTGATTTGCTGAGTTCTTTAGGTTTAGCACATAGACATTTGATGCTTTGCACTGGA GATTTGGGTTTTAGTGCAGCAAAAACTGTGGATCTTGAAGTGTGGCTTCCAGGACAAAATAAATATCGTGAGATTAGCTC GGTTTCAAATTGTCGTGATTTTCAAGCAAGACGTGCTAAAATTCGCTATAAAAATGAACAAGGAAAAAATGAACTCGTTC ACACTCTTAATGGCTCATCTTTGGCAGTAGGAAGAACCTTGGTAGCGATTATGGAAAATTATCAAGATAAAGAAGGAAAA ATTCATATTCCTGATGCTTTGAAAAAATATTTTTAA Protein sequence : MLDLKNLQNNFDEVAKKLKNKKVDENILKKLAELFASLKKEKTALEEFQAFQNKFSKELATAEDKESLKAKLSENKSKIN EQSVKVNALENELEEIAHAIPNIPDECVPVGEDEDENVELKKVLNPPSFDFTPKEHFELGESLNWLDFVRGVKISQSRFC VLKNEGALLSRALVNYMIDFNRSHGFEFVNVPFLVNGATMFGTGQLPKFKEDMYKVDDEDLYLISTSEIPVTNLYSGEIL ASETLPIKMTCYSACFRKEAGSAGRDTRGIIRQHQFEKVELVSITKPEQSDSVFNEMLECASDLLSSLGLAHRHLMLCTG DLGFSAAKTVDLEVWLPGQNKYREISSVSNCRDFQARRAKIRYKNEQGKNELVHTLNGSSLAVGRTLVAIMENYQDKEGK IHIPDALKKYF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 2e-86 | 49 |
