Gene Information

Name : APECO1_O1R214 (APECO1_O1R214)
Accession : YP_001481570.1
Strain :
Genome accession: NC_009838
Putative virulence/resistance : Unknown
Product : ISEc8 transposase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3436
EC number : -
Position : 230835 - 232370 bp
Length : 1536 bp
Strand : -
Note : -

DNA sequence :
ATGAACGACACCTCTTCTGACGACATCCTTCTGCTGAAACAGCGCCTGGCCGAACAGGAAGCGTTGATCCACGCCCTGCA
GGAAAAGCTGAGCAACCGGGAACGCGAAATAGACCATCTGCAGGCGCAACTGGATAAGCTGCGCCGGATGAACTTCGGCA
GTCGTTCCGAAAAGGTATCCCGCCGTATCGCGCAAATGGAAGCTGACCTGAACCTGCTGCAGCAGGAAAGCGATACGCTG
ACCGGCCGGGTGGATGACCCGGCAGTGCAGCGCCCGCTGCGTCAGACCCGCACCCGCAAACCGTTCCCTGAGTCACTCCC
ACGGGATGAGAAGCGGCTGCTGCCGACTGAGCCGTGTTGCCCGGAGTGCGGTGGTTCGCTGAGTTACCTGGGTGAGGATG
CCGCCGAACAGCTGGAGCTGATGCGCAGCGCCTTCCGGGTTATCCGGACAGTCCGTGAAAAGCATGCCTGCCGTCGGTGC
GATCGCATCGTTCAGGCCCCGGCTCCTTCGCGCCCCATCGAACGGGGGATCGCCGGACCGGGGCTGCTGGCCCGAGTGCT
GACCTCAAAGTATGCAGAGCACACACCGCTGTATCGCCAGTCGGAGATCTATGCCCGCCAGGGTGTAGTGTTGAGTCGTT
CTGTACTGTCGGGCTGGGTGGATGCGTGTTGTCGTCTGCTGGCACCGCTGGATGAAGCCCTTCAGCACTATGTCCTGACC
GACGGCAAACTCCATGCTGACGATACGCCTGTCCCGGTGCTGTTGCCAGGCAATAAGAAGACGAAGACCGGGCGCTTATG
GACGTACGTTCGAGACGACCGCAACGCCGGATCAGCGCTGGCCCCCGCAGTGTGGTTCGCTTACAGCCCGGACAGAAAAG
GTATCCACCCTCAGACCCATCTTGCAGGCTTCAGTGGCGTACTGCAGGCTGATGCCTACGCCGGGTTCAACGAGCTCTAC
CGCGACGGCCATATAAAGGAAGCCGCGTGCTGGGCCCATGCCCGCCGAAAAATCCACGATGTTCACGTCCGTACCCCGTC
AGCCCTGACGGAGGAGGCGCTGAAACGGATCGGCGAGCTGTATGCCATCGAGTCGGAGCTCAGAGGTAAAAGAGCAGAGG
AACGGCAGGCAGTCCGGCACCAAAAAGTGCTGCCGCTGCTGGCGTCACTGGAGGGGTGGCTGCGGGAGAAACAGAAAACC
CTCTCAAGGCACTCAGAACTGGCGAAGGCGTTCGGGTATGCGCTGAACCAGTGGCCGGCGCTGACCCGCTATGCAGAAGA
TGGCTGGGTGGAGGTGGATAATAACATTGCCGAAAACGCCCTACGACTGGTCAGTCTGGGGAGAAAAAACTGGCTGTTCT
TCGGCTCGGATCATGGTGGTGAGCGCGGTGCGTCACTGTACAGTCTTATCGGGACGTGCAAATTAAACGGCGTGGATCCG
GAACGCTATCTGCATCATGTACTTGATGTCATCGCCGACTGGCCTGTGAACCGGGTGGGTGCTCTGCTCCCGTGGCGGGT
TACTCTGCCTGCCTGA

Protein sequence :
MNDTSSDDILLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNLLQQESDTL
TGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPTEPCCPECGGSLSYLGEDAAEQLELMRSAFRVIRTVREKHACRRC
DRIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYRQSEIYARQGVVLSRSVLSGWVDACCRLLAPLDEALQHYVLT
DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTHLAGFSGVLQADAYAGFNELY
RDGHIKEAACWAHARRKIHDVHVRTPSALTEEALKRIGELYAIESELRGKRAEERQAVRHQKVLPLLASLEGWLREKQKT
LSRHSELAKAFGYALNQWPALTRYAEDGWVEVDNNIAENALRLVSLGRKNWLFFGSDHGGERGASLYSLIGTCKLNGVDP
ERYLHHVLDVIADWPVNRVGALLPWRVTLPA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z4337 NP_289562.1 hypothetical protein Not tested OI-122 Protein 0.0 89
Z5098 NP_290249.1 prophage-associated protein Not tested LEE Protein 0.0 89
ECs4547 NP_312574.1 hypothetical protein Not tested LEE Protein 0.0 89
unnamed AAC31494.1 L0015 Not tested LEE Protein 0.0 89
unnamed ACU09439.1 IS66 family element transposase Not tested LEE Protein 0.0 89
c3563 NP_755438.1 hypothetical protein Not tested PAI I CFT073 Protein 3e-156 89
unnamed AAL08460.1 unknown Not tested SRL Protein 1e-165 89
Z1131 NP_286666.1 hypothetical protein Not tested TAI Protein 0.0 88
Z1570 NP_287074.1 hypothetical protein Not tested TAI Protein 0.0 88
tnp AEA34686.1 transposase Not tested Not named Protein 0.0 88
unnamed CAC39285.1 hypothetical protein Not tested LPA Protein 0.0 88
st57 CAC81895.1 ST57 protein Not tested LEE II Protein 0.0 87
unnamed CAI43806.1 hypothetical protein Not tested LEE Protein 0.0 87
unnamed AAL57570.1 unknown Not tested LEE Protein 0.0 87
Z4340 NP_289564.1 hypothetical protein Not tested OI-122 Protein 2e-147 64
Z1161 NP_286696.1 hypothetical protein Not tested TAI Protein 7e-151 64
Z1600 NP_287104.1 hypothetical protein Not tested TAI Protein 7e-151 64
s0025 CAD33772.1 IS66-like transposase Not tested PAI I 536 Protein 1e-109 63
aec53 AAW51736.1 Aec53 Not tested AGI-3 Protein 4e-142 60
tnp AEA34687.1 IS66 family transposase Not tested Not named Protein 3e-101 58
Z4317 NP_289543.1 hypothetical protein Not tested OI-122 Protein 7e-120 56
BCAM0248 YP_002232880.1 putative transposase Not tested BcenGI11 Protein 3e-132 56
ECO103_3554 YP_003223421.1 hypothetical protein Not tested LEE Protein 1e-119 55

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
APECO1_O1R214 YP_001481570.1 ISEc8 transposase VFG0793 Protein 0.0 89
APECO1_O1R214 YP_001481570.1 ISEc8 transposase VFG1700 Protein 1e-156 89
APECO1_O1R214 YP_001481570.1 ISEc8 transposase VFG1051 Protein 8e-166 89
APECO1_O1R214 YP_001481570.1 ISEc8 transposase VFG1513 Protein 8e-110 63
APECO1_O1R214 YP_001481570.1 ISEc8 transposase VFG1736 Protein 2e-122 63