Gene Information

Name : APECO1_O1CoBM98 (APECO1_O1CoBM98)
Accession : YP_001481253.1
Strain :
Genome accession: NC_009837
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 85922 - 86767 bp
Length : 846 bp
Strand : +
Note : IS629 transposase; similar to CAD88882; identified by match to protein family HMM PF00665

DNA sequence : 
GTGAGCTGCAGTGAGCTGCATATTGCCCCGTCAACGTATTACCACTGTCAGCAACAGCAGCATCATCCTGATAAACGCAG
CGCCCGTGCGCAGCGTGATGACTGGCTGAAGAAAGAGATACAGCGCGTATACGATGAAAATCACCAGGTGTACGGTGTGC
GTAAAGTCTGGCGTCAGTTGTTACGGGAAGGTATCAGAGTGGCCAGATGCACTGTGACACGTCTTATGGCGGTTATGGGT
TTTGCCGATGTTCTCCGGGGTAAAAAGGTCCGCATTACCGTCAGCCGGAAAGCCGTTGCCGCAGGCGACCGCGTAAACCG
TCATTTCGTGGCAGAACGTCCTGACCAGCTGTGGGTGGCTGATTTTACTTACGTCAGCACATGGCAGGGCTTTGTTTATG
TGGCGTTCATCATTGATGTGTTTGCCGGATACATCGTGGGATGGCGGGTCTCCTCGTCCATGGAAACGACATTCGTGCTG
GATGCACTGGAGCAGGCGTTGTGGGCCCGTCGTCCATCTGGCACCATCCATCACAGCGATAAAGGCTCTCAGTATGTATC
GCTGGCCTACACGCAGCGGCTTAAGGAAGTCGGATTACTGGCATCAACAGGGAGCACAGGCGACTCGTATGACAACGCGA
TGGCGGAGAGCATCAATGGTCTTTACAAGGCGGAGGTAATACACCGTAAGAGCTGGAAAAACCGGACAGAAGTGGAGCTG
GCTACACTCACGTGGGTGGACTGGTATAACAATCGACGATTGCTGGAAAGGCTGGGCCATACTCCCCCGGCAGAAGCAGA
AAAAGCTTATTATGCTTCCATCGGAAACAATGATCTGGCAGCCTGA

Protein sequence : 
MSCSELHIAPSTYYHCQQQQHHPDKRSARAQRDDWLKKEIQRVYDENHQVYGVRKVWRQLLREGIRVARCTVTRLMAVMG
FADVLRGKKVRITVSRKAVAAGDRVNRHFVAERPDQLWVADFTYVSTWQGFVYVAFIIDVFAGYIVGWRVSSSMETTFVL
DALEQALWARRPSGTIHHSDKGSQYVSLAYTQRLKEVGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNRTEVEL
ATLTWVDWYNNRRLLERLGHTPPAEAEKAYYASIGNNDLAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 4e-107 96
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 1e-124 96
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 8e-125 96
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 2e-124 96
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 7e-92 95
tnpC AAD44736.1 TnpC Not tested SHI-2 Protein 9e-88 95
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 1e-123 95
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 3e-121 95
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 3e-121 95
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 3e-121 95
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 7e-121 95
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 7e-124 95
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 3e-124 95
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 3e-124 95
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 5e-90 95
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 2e-91 94
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 6e-119 94
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 1e-121 94
Z1221 NP_286756.1 transposase Not tested TAI Protein 1e-121 94
Z1198 NP_286733.1 transposase Not tested TAI Protein 4e-121 93
Z1638 NP_287141.1 transposase Not tested TAI Protein 4e-121 93
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 1e-120 93
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 2e-48 44
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 9e-30 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
APECO1_O1CoBM98 YP_001481253.1 transposase VFG1602 Protein 6e-121 93