Gene Information

Name : APECO1_O1CoBM93 (APECO1_O1CoBM93)
Accession : YP_001481248.1
Strain :
Genome accession: NC_009837
Putative virulence/resistance : Unknown
Product : hypothetical protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3436
EC number : -
Position : 78870 - 80408 bp
Length : 1539 bp
Strand : +
Note : putative transposase; identified by match to protein family HMM PF03050

DNA sequence :
ATGAACGACATCTCTTCTGACGACATCTTCCTGCTGAAACAGCGCCTGGCCGAACAGGAAGCGCTGATCCACGCCCTGCA
GGAAAAGCTGAGCAACCGGGAGCGCGAAATAGACCATCTGCAGGCGCAGCTGGATAAACTCCGCCGGATGAACTTCGGCA
GTCGTTCCGAAAAAGTCTCCCGCCGTATCGCACAAATGGAAGCCGATCTGAACCAGCTTCAGAAAGAGAGCGATACGCTG
ACTGGTAGGGTGTATGACCCGGCAGTACAGCGTCCGTTGCGTCAGACCCGCATCCGTAAGCCGTTCCCTGAATCACTACC
CCGTGACGAAAAGCGACTGTTGCCTGCGGCGCCGTGCTGCCCGAACTGCGGCGGTTCACTGAGCTATCTGGGCGAGGATA
CCGCCGAACAGCTGGAGTTGATGCGTAGCGCCTTCCGGGTTATCCGGACGGTACGGGAAAAACATGCCTGTACTCAGTGC
GATGCCATCGTGCAGGCACCTGCACCTTCGCGGCCCATCGAGCGGGGTATCGCCGGACCGGGGCTGCTGGCCCGCGTGCT
GACCTCGAAGTATGCAGAGCACACCCCGCTGTATCGCCAGTCAGAAATATACGGCCGGCAAGGTGTGGAGCTGAGCCGTT
CACTGCTGTCGGGCTGGGTGGATGCATGCTGCCGGCTGCTGTCTCCGCTGGAAGAGGCGCTTCATGGCTATGTCATGACT
GACGGCAAACTCCATGCCGATGATACCCCGGTCCAGGTACTGATGCCGGGTAATAAGAAGACGAAGACCGGGCGGTTGTG
GGCGTATGTTCGTGATGACCGCAATGCCGGGTCAGCGTTGGCACCTGCAGTGTGGTTCGCTTACAGCCCGGACAGAAAAG
GCATCCATCCGCAGACTCATCTTGCTTGCTTCAGCGGTGTGCTGCAAGCGGATGCGTACGCCGGGTTCAACGAGCTGTAT
CGCAATGGTGGGATAACGGAAGCTGCCTGCTGGGCTCATGCCCGCCGAAAGATCCACGATGTGCACGTCCGCATCCCGTC
AGCACTGACGGAAGAAGCCCTGGAGCAGATCGGTCAGTTGTACGCCATAGAGGCGGATATAAGGGGAATGCCGGCAGAGC
AGCGGCTTGCTGAACGTCAGCGAAAAACGAAACCGCTGTTGAAATCCCTGGAAAGCTGGTTGCGTGAAAAGATGAAGACC
CTGTCGCGACACTCAGAGTTGGCGAAGGCGTTCGCGTACGCACTTAACCAGTGGCCGGCACTGACGTACTATGCGAACGA
TGGCTGGGTGGAAATCGACAACAACATCGCTGAAAATGCCCTGCGGGCGGTAAGTCTGGGTCGTAAAAACTTCCTGTTCT
TCGGCTCTGGCCATGGTGGTGAGCGGGGAGCGCTACTGTACAGCCTGATAGGGACGTGCAAACTGAATGACGTGGATCCA
GAAAGCTACCTTCGCCATGTGCTTGGCGTCATAGCAGACTGGCCGGTCAACCGGGTCAGCGAACTGCTTCCGTGGCGCAT
AGCACTGCCAGCTGAATAA

Protein sequence :
MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNQLQKESDTL
TGRVYDPAVQRPLRQTRIRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQC
DAIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYRQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT
DGKLHADDTPVQVLMPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTHLACFSGVLQADAYAGFNELY
RNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKT
LSRHSELAKAFAYALNQWPALTYYANDGWVEIDNNIAENALRAVSLGRKNFLFFGSGHGGERGALLYSLIGTCKLNDVDP
ESYLRHVLGVIADWPVNRVSELLPWRIALPAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnp AEA34686.1 transposase Not tested Not named Protein 0.0 99
Z4337 NP_289562.1 hypothetical protein Not tested OI-122 Protein 0.0 99
Z5098 NP_290249.1 prophage-associated protein Not tested LEE Protein 0.0 99
unnamed ACU09439.1 IS66 family element transposase Not tested LEE Protein 0.0 99
unnamed CAC39285.1 hypothetical protein Not tested LPA Protein 0.0 99
unnamed AAC31494.1 L0015 Not tested LEE Protein 0.0 99
ECs4547 NP_312574.1 hypothetical protein Not tested LEE Protein 0.0 99
st57 CAC81895.1 ST57 protein Not tested LEE II Protein 0.0 99
Z1131 NP_286666.1 hypothetical protein Not tested TAI Protein 0.0 99
Z1570 NP_287074.1 hypothetical protein Not tested TAI Protein 0.0 99
unnamed AAL08460.1 unknown Not tested SRL Protein 0.0 99
unnamed AAL57570.1 unknown Not tested LEE Protein 0.0 98
unnamed CAI43806.1 hypothetical protein Not tested LEE Protein 0.0 98
c3563 NP_755438.1 hypothetical protein Not tested PAI I CFT073 Protein 1e-164 92
Z4340 NP_289564.1 hypothetical protein Not tested OI-122 Protein 2e-152 64
Z1161 NP_286696.1 hypothetical protein Not tested TAI Protein 2e-156 64
Z1600 NP_287104.1 hypothetical protein Not tested TAI Protein 2e-156 64
s0025 CAD33772.1 IS66-like transposase Not tested PAI I 536 Protein 1e-106 63
aec53 AAW51736.1 Aec53 Not tested AGI-3 Protein 2e-141 60
tnp AEA34687.1 IS66 family transposase Not tested Not named Protein 2e-102 59
ECO103_3554 YP_003223421.1 hypothetical protein Not tested LEE Protein 1e-118 55
BCAM0248 YP_002232880.1 putative transposase Not tested BcenGI11 Protein 1e-129 55
Z4317 NP_289543.1 hypothetical protein Not tested OI-122 Protein 1e-118 54

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
APECO1_O1CoBM93 YP_001481248.1 hypothetical protein VFG0793 Protein 0.0 99
APECO1_O1CoBM93 YP_001481248.1 hypothetical protein VFG1051 Protein 0.0 99
APECO1_O1CoBM93 YP_001481248.1 hypothetical protein VFG1700 Protein 6e-165 92
APECO1_O1CoBM93 YP_001481248.1 hypothetical protein VFG1513 Protein 7e-107 63
APECO1_O1CoBM93 YP_001481248.1 hypothetical protein VFG1736 Protein 5e-125 63