|
Name : tsh (APECO1_O1CoBM73) Accession : YP_001481228.1 Strain : Genome accession: NC_009837 Putative virulence/resistance : Virulence Product : Tsh Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG3468 EC number : - Position : 58775 - 62908 bp Length : 4134 bp Strand : + Note : temperature sensitive hemagglutinin; similar to AAA24698; identified by match to protein family HMM PF02395 DNA sequence : ATGAACAGAATTTATTCTCTTCGCTACAGCGCTGTGGCCCGGGGCTTTATTGCCGTATCTGAGTTTGCTAGGAAATGTGT TCATAAGTCTGTCAGACGTCTGTGTTTCCCGGTTTTATTACTGATCCCGGTACTATTCTCTGCAGGAAGTCTTGCGGGAA CGGTCAATAATGAACTCGGGTATCAGTTATTTCGTGATTTTGCTGAAAATAAGGGGATGTTCCGCCCGGGGGCAACGAAT ATCGCTATTTATAATAAGCAGGGAGAATTTGTCGGTACGCTGGATAAGGCAGCTATGCCTGATTTCAGTGCTGTGGATTC GGAAATCGGTGTGGCGACACTGATAAACCCGCAGTATATCGCCAGCGTGAAACATAACGGGGGATATACAAACGTTAGCT TTGGTGATGGTGAAAACCGTTACAATATCGTGGACCGGAATAATGCGCCGTCACTGGATTTTCATGCCCCCCGGCTGGGT AAACTGGTGACAGAGGTTGCCCCTACTGCGGTGACGGCGCAGGGGGCAGTGGCTGGCGCATATCTGGATAAGGAGCGCTA TCCTGTTTTTTATCGTCTGGGGTCTGGTACTCAGTATATTAAGGACAGTAACGGACAGCTGACAAAAATGGGAGGTGCAT ATTCCTGGCTGACCGGCGGGACTGTCGGTAGCCTGTCATCCTATCAGAATGGAGAAATGATTAGCACCAGTTCAGGTCTG GTTTTTGATTACAAACTTAATGGTGCAATGCCCATTTATGGCGAGGCCGGTGACAGCGGTTCGCCTTTATTTGCTTTTGA TACTGTTCAGAATAAATGGGTGCTGGTCGGTGTTCTTACTGCGGGGAATGGCGCGGGGGGCAGGGGAAATAACTGGGCTG TTATTCCACTGGATTTTATCGGGCAGAAATTTAATGAAGACAATGATGCCCCGGTCACGTTCAGAACATCGGAAGGTGGT GCACTGGAGTGGAGCTTTAACAGCAGTACCGGAGCTGGTGCGCTGACACAGGGAACCACCACATATGCCATGCACGGGCA GCAGGGAAATGACCTGAATGCTGGTAAGAACCTGATATTTCAGGGGCAGAATGGTCAGATTAACCTTAAGGATTCGGTTT CTCAGGGGGCGGGTTCCCTGACGTTCCGTGATAATTACACAGTAACAACCTCTAACGGAAGTACCTGGACCGGTGCCGGT ATTGTTGTGGACAACGGGGTGTCCGTAAACTGGCAGGTTAATGGTGTTAAGGGCGATAACCTGCATAAAATTGGTGAAGG TACGCTGACGGTACAGGGTACAGGTATTAATGAAGGTGGCCTGAAGGTCGGGGACGGAAAGGTTGTACTGAACCAGCAGG CGGACAATAAAGGACAGGTGCAGGCGTTCAGCAGTGTTAATATTGCCAGTGGCCGGCCGACCGTGGTACTGACTGATGAG CGGCAGGTAAATCCGGATACCGTCTCATGGGGATATCGTGGGGGCACACTGGATGTTAATGGTAACAGTCTGACGTTTCA TCAGTTGAAGGCGGCAGATTATGGTGCCGTGCTGGCGAATAACGTTGATAAACGGGCCACTATCACGCTGGACTATGCCC TGCGGGCTGACAAAGTAGCACTGAATGGCTGGTCGGAATCAGGTAAAGGAACTGCCGGAAATTTATATAAATACAATAAC CCGTACACAAATACGACGGATTACTTCATCCTGAAGCAGAGCACCTATGGTTATTTCCCCACGGACCAGAGCAGCAACGC CACCTGGGAGTTTGTGGGGCACAGTCAGGGGGATGCACAGAAACTGGTAGCTGACCGTTTCAATACTGCAGGGTATCTGT TTCACGGACAACTGAAAGGCAATCTGAATGTGGACAATCGCCTGCCTGAAGGCGTTACCGGTGCTCTGGTGATGGACGGA GCTGCGGATATCTCCGGTACATTCACCCAGGAAAACGGGCGTCTGACGCTGCAGGGGCATCCGGTTATCCATGCATACAA TACTCAGTCTGTGGCTGACAAACTGGCTGCCAGTGGAGACCATTCGGTTCTGACTCAGCCTACGTCATTCAGTCAGGAGG ACTGGGAGAACCGCAGTTTTACCTTTGACAGGCTGTCACTGAAGAACACTGATTTTGGTCTTGGTCGCAATGCCACACTG AACACAACCATCCAGGCAGATAACTCCAGCGTCACGCTGGGCGACAGCCGGGTATTTATCGACAAAAACGATGGCCAGGG AACAGCCTTTACCCTTGAAGAAGGCACATCTGTTGCAACTAAAGATGCAGATAAAAGTGTCTTCAACGGCACCGTCAACC TGGATAATCAGTCAGTGCTGAATATCAATGATATATTCAATGGCGGAATACAGGCGAACAACAGTACCGTGAATATCTCC TCAGACAGTGCCGTTCTGGGGAACTCAACACTGACCAGTACCGCCCTGAATCTGAACAAGGGAGCAAATGCTCTGGCCAG TCAGAGTTTTGTTTCTGACGGTCCAGTGAATATTTCTGATGCCACCCTGAGTCTGAACAGCCGTCCTGATGAGGTATCTC ACACACTTTTACCTGTATACGATTATGCCGGTTCATGGAACCTGAAGGGAGACGATGCCCGCCTGAACGTGGGGCCGTAC AGTATGTTGTCAGGTAATATCAATGTTCAGGATAAAGGGACTGTCACCCTCGGAGGGGAAGGGGAACTGAGTCCTGACCT GACTCTTCAGAATCAGATGTTGTACAGCCTGTTTAACGGGTACCGCAATATCTGGAGCGGGAGCCTGAATGCACCGGATG CCACCGTCAGCATGACAGACACCCAGTGGTCGATGAACGGAAACTCCACGGCAGGAAATATGAAACTTAACCGGACAATA GTCGGTTTTAACGGGGGAACATCACCGTTCACGACACTGACAACAGATAATCTGGACGCGGTTCAGTCAGCATTTGTCAT GCGTACAGACCTTAACAAGGCAGACAAACTGGTGATAAACAAGTCGGCAACAGGTCATGACAACAGCATCTGGGTTAACT TCCTGAAAAAACCTTCTAACAAGGACACGCTTGATATTCCACTGGTCAGCGCACCTGAAGCGACAGCTGATAATCTGTTC AGGGCATCAACACGGGTTGTGGGATTCAGTGATGTCACCCCCATCCTTAGTGTCAGAAAAGAGGACGGGAAAAAAGAGTG GGTCCTCGATGGTTACCAGGTTGCACGTAACGACGGCCAGGGTAAGGCTGCCGCCACATTCATGCACATCAGCTATAACA ACTTCATCACTGAAGTTAACAACCTGAACAAACGCATGGGCGATTTGAGGGATATTAATGGCGAAGCCGGTACGTGGGTG CGTCTGCTGAACGGTTCCGGCTCTGCTGATGGCGGTTTCACTGACCACTATACCCTGCTGCAGATGGGGGCTGACCGTAA GCACGAACTGGGAAGTATGGACCTGTTTACCGGCGTGATGGCCACCTACACTGACACAGATGCGTCAGCAGACCTGTACA GCGGTAAAACAAAATCATGGGGTGGTGGTTTCTATGCCAGTGGTCTGTTCCGGTCCGGCGCTTACTTTGATGTGATTGCC AAATATATTCACAATGAAAACAAATATGACCTGAACTTTGCCGGAGCTGGTAAACAGAACTTCCGCAGCCATTCACTGTA TGCAGGTGCAGAAGTCGGATACCGTTATCATCTGACAGATACGACGTTTGTTGAACCTCAGGCGGAACTGGTCTGGGGAA GACTGCAGGGCCAAACATTTAACTGGAACGACAGTGGAATGGATGTCTCAATGCGTCGTAACAGCGTTAATCCTCTGGTA GGCAGAACCGGCGTTGTTTCCGGTAAAACCTTCAGTGGTAAGGACTGGAGTCTGACAGCCCGTGCCGGCCTGCATTATGA GTTCGATCTGACGGACAGTGCTGACGTTCATCTGAAGGATGCAGCGGGAGAACATCAGATTAATGGCAGAAAAGACAGTC GTATGCTTTACGGTGTGGGGTTAAATGCCCGGTTTGGCGACAATACGCGTCTGGGGCTGGAAGTTGAACGCTCTGCATTT GGTAAATACAACACAGATGATGCGATAAACGCTAATATTCGTTATTCATTCTGA Protein sequence : MNRIYSLRYSAVARGFIAVSEFARKCVHKSVRRLCFPVLLLIPVLFSAGSLAGTVNNELGYQLFRDFAENKGMFRPGATN IAIYNKQGEFVGTLDKAAMPDFSAVDSEIGVATLINPQYIASVKHNGGYTNVSFGDGENRYNIVDRNNAPSLDFHAPRLG KLVTEVAPTAVTAQGAVAGAYLDKERYPVFYRLGSGTQYIKDSNGQLTKMGGAYSWLTGGTVGSLSSYQNGEMISTSSGL VFDYKLNGAMPIYGEAGDSGSPLFAFDTVQNKWVLVGVLTAGNGAGGRGNNWAVIPLDFIGQKFNEDNDAPVTFRTSEGG ALEWSFNSSTGAGALTQGTTTYAMHGQQGNDLNAGKNLIFQGQNGQINLKDSVSQGAGSLTFRDNYTVTTSNGSTWTGAG IVVDNGVSVNWQVNGVKGDNLHKIGEGTLTVQGTGINEGGLKVGDGKVVLNQQADNKGQVQAFSSVNIASGRPTVVLTDE RQVNPDTVSWGYRGGTLDVNGNSLTFHQLKAADYGAVLANNVDKRATITLDYALRADKVALNGWSESGKGTAGNLYKYNN PYTNTTDYFILKQSTYGYFPTDQSSNATWEFVGHSQGDAQKLVADRFNTAGYLFHGQLKGNLNVDNRLPEGVTGALVMDG AADISGTFTQENGRLTLQGHPVIHAYNTQSVADKLAASGDHSVLTQPTSFSQEDWENRSFTFDRLSLKNTDFGLGRNATL NTTIQADNSSVTLGDSRVFIDKNDGQGTAFTLEEGTSVATKDADKSVFNGTVNLDNQSVLNINDIFNGGIQANNSTVNIS SDSAVLGNSTLTSTALNLNKGANALASQSFVSDGPVNISDATLSLNSRPDEVSHTLLPVYDYAGSWNLKGDDARLNVGPY SMLSGNINVQDKGTVTLGGEGELSPDLTLQNQMLYSLFNGYRNIWSGSLNAPDATVSMTDTQWSMNGNSTAGNMKLNRTI VGFNGGTSPFTTLTTDNLDAVQSAFVMRTDLNKADKLVINKSATGHDNSIWVNFLKKPSNKDTLDIPLVSAPEATADNLF RASTRVVGFSDVTPILSVRKEDGKKEWVLDGYQVARNDGQGKAAATFMHISYNNFITEVNNLNKRMGDLRDINGEAGTWV RLLNGSGSADGGFTDHYTLLQMGADRKHELGSMDLFTGVMATYTDTDASADLYSGKTKSWGGGFYASGLFRSGAYFDVIA KYIHNENKYDLNFAGAGKQNFRSHSLYAGAEVGYRYHLTDTTFVEPQAELVWGRLQGQTFNWNDSGMDVSMRRNSVNPLV GRTGVVSGKTFSGKDWSLTARAGLHYEFDLTDSADVHLKDAAGEHQINGRKDSRMLYGVGLNARFGDNTRLGLEVERSAF GKYNTDDAINANIRYSF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| vat | YP_851472.1 | vacuolating autotransporter | Not tested | PAI III APEC-O1 | Protein | 0.0 | 79 |
| unnamed | CAD66214.1 | putative hemoglobin protease | Not tested | PAI III 536 | Protein | 0.0 | 79 |
| vat | AAO21903.1 | vacuolating autotransporter toxin | Virulence | Not named | Protein | 0.0 | 78 |
| pic | NP_708747.3 | serine protease | Not tested | SHI-1 | Protein | 0.0 | 50 |
| she | AAB58244.1 | mucinase | Virulence | SHI-1 | Protein | 0.0 | 50 |
| pic | AAK00464.1 | Pic | Virulence | SHI-1 | Protein | 0.0 | 50 |
| pic | NP_838464.1 | serine protease precurser | Virulence | SHI-1 | Protein | 0.0 | 49 |
| unnamed | CAC39286.1 | hypothetical protein | Not tested | LPA | Protein | 0.0 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| tsh | YP_001481228.1 | Tsh | VFG1689 | Protein | 0.0 | 79 |
| tsh | YP_001481228.1 | Tsh | VFG0904 | Protein | 0.0 | 79 |
| tsh | YP_001481228.1 | Tsh | VFG0635 | Protein | 0.0 | 50 |
| tsh | YP_001481228.1 | Tsh | VFG0861 | Protein | 0.0 | 50 |
| tsh | YP_001481228.1 | Tsh | VFG0903 | Protein | 0.0 | 50 |
