Gene Information

Name : APECO1_O1CoBM71 (APECO1_O1CoBM71)
Accession : YP_001481226.1
Strain :
Genome accession: NC_009837
Putative virulence/resistance : Unknown
Product : hypothetical protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 57293 - 58183 bp
Length : 891 bp
Strand : -
Note : transposase for IS629; similar to CAD88882; identified by match to protein family HMM PF00665

DNA sequence : 
ATGATGCCACTGCTGGATAAGCTGCGTGAGCAGTACGGGGTCGGACCGCTATGCAGCGAACTGCATATTGCCCCGTCAAC
GTATTACCACTGTCAGCAACAGCGACATCATCCGGATAAACGCAGTGCCCGTGCGCAGCGCGATGACTGGCTGAAGAAAG
AGATACAGCGCGTATACGATGAAAATCACAAGGTATACGGTGTGCGTAAAGTCTGGCGTCAGTTGTTACGGGAAGGTATC
AGAGTGGCCAGATGCACTGTGGCACGTCTCATGGCGGTTATGGGACTTGCCGGTGTTCTCCGTGGTAAAAAGGTCCGTAC
GACCATCAGCCGGAAAGCCGTTGTCGCAGGCGACCGCGTAAACCGTCAGTTCGTGGCAGAACGTCCTGACCAGTTGTGGG
TGGCTGATTCTACTTACGTCAGCACATGGCAGGGGGTCGTCTATGTGGCGTTCATCATTGATGTGTTTGCCGGATACATC
GTGGGGTGGCGGGTCTCATCGTCTATGGAAACGACATTTGTGCTGGATGCTCTGGAGCAGGCGTTATGGGCCCGTCGACC
GTCCGGCACAGTCCATCACAGTGATAAAGGTTCTCAGTATGTATCGCTGGCCTACACACAGCGGCTTAAGGAAGCCGGAT
TACTGGCATCAACAGGAAGTACAGGCGACTCGTATGACAACGCGATGGCGGAGAGCATCAATGGCCTTTACAAAGCGGAG
GTAATACACCGTAAGAGCTGGAAAAACCGTGCAGAAGTGGAACTGGCCACACTCACGTGGGTGGACTGGTATAACAATCG
ACGATTGCTGGAAAGGCTGGGCCATACTCCTCCGGCAGAAGCAGAAAAAGCTTATTATGCTTCCATCGGAAACGATGATC
TGGCAGCCTGA

Protein sequence : 
MMPLLDKLREQYGVGPLCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKKEIQRVYDENHKVYGVRKVWRQLLREGI
RVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVVAGDRVNRQFVAERPDQLWVADSTYVSTWQGVVYVAFIIDVFAGYI
VGWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAE
VIHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHTPPAEAEKAYYASIGNDDLAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 2e-134 99
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 1e-132 98
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 3e-106 98
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-99 98
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 1e-129 97
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 2e-132 97
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 3e-91 97
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 1e-129 97
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 2e-132 97
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-133 97
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 1e-129 97
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 5e-91 97
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 3e-129 96
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 3e-131 95
Z1198 NP_286733.1 transposase Not tested TAI Protein 3e-128 95
Z1638 NP_287141.1 transposase Not tested TAI Protein 3e-128 95
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 1e-128 95
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 5e-127 95
Z1221 NP_286756.1 transposase Not tested TAI Protein 8e-129 95
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 3e-131 95
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 2e-127 93
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 8e-51 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
APECO1_O1CoBM71 YP_001481226.1 hypothetical protein VFG1602 Protein 9e-128 93