Gene Information

Name : sitB (APECO1_O1CoBM179)
Accession : YP_001481335.1
Strain :
Genome accession: NC_009837
Putative virulence/resistance : Virulence
Product : SitB
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 154457 - 155284 bp
Length : 828 bp
Strand : -
Note : ABC iron transport system, ATP-binding component; similar to ABA54732; identified by match to protein family HMM PF00005

DNA sequence : 
ATGATGCAATCTGCAGGCATTGTCGTTAATGATGTTACTGTCACCTGGCGTAACGGGCACACAGCACTGCGCGATGCATC
CTTCACAGTACCAGGCGGATCTATTGCCGCTCTGGTTGGGGTAAACGGTTCCGGAAAATCGACGTTGTTTAAAGCGATTA
TGGGATTTGTGCGTCTGACCAGCGGGAAGATATCTGTTCTGGGTATTCCCACACGACAGGCGCTACAGAAAAACCTGGTT
GCCTACGTCCCTCAGTCAGAAGAGGTTGACTGGTCATTTCCTGTACTGGTGGAAGATGTGGTGATGATGGGCCGCTATGG
GCATATGGGTATGTTGCGTATCGCCAAAAAGAGGGATCGTCAGATTGTCACCGATGCGCTGGAACGTGTCGATATGGTGG
ATTTTCGCCATCGACAAATCGGCGAGCTTTCCGGTGGACAAAAGAAACGCGTCTTTCTGGCGAGAGCGATTGCACAGCAG
GGTTATGTGATCCTGCTGGATGAACCTTTTACCGGCGTTGATGTGAAAACCGAAGCGAAAATCATCAGCCTGTTGAGGGA
GTTACGCGCGGAAGGCAAAACGATGCTTGTCTCAACGCACAATCTCGGATCCGTCACGACATTTTGCGATTATACGGTCA
TGGTCAAAGGCACCGTCCTGGCAAGCGGGCCGACAGACACCACTTTTACAGCCGAGAACCTGGAGCTGGCTTTTAGCGGC
GTACTGCGCCATGTCACACTTAACGGCTCGGAAGAAAGCATTATTACTGACGATGAACGCCCTTTTGTGGCACATCGACC
GTCAGCGGTGCAGAGGGAAGAAAGATGA

Protein sequence : 
MMQSAGIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKAIMGFVRLTSGKISVLGIPTRQALQKNLV
AYVPQSEEVDWSFPVLVEDVVMMGRYGHMGMLRIAKKRDRQIVTDALERVDMVDFRHRQIGELSGGQKKRVFLARAIAQQ
GYVILLDEPFTGVDVKTEAKIISLLRELRAEGKTMLVSTHNLGSVTTFCDYTVMVKGTVLASGPTDTTFTAENLELAFSG
VLRHVTLNGSEESIITDDERPFVAHRPSAVQREER

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 4e-101 78
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 4e-101 78
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 3e-100 77
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 4e-100 77
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-100 77

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitB YP_001481335.1 SitB BAC0350 Protein 2e-100 77
sitB YP_001481335.1 SitB BAC0440 Protein 2e-80 62
sitB YP_001481335.1 SitB BAC0400 Protein 5e-44 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitB YP_001481335.1 SitB VFG0526 Protein 2e-100 77