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Name : shiF (APECO1_O1CoBM173) Accession : YP_001481329.1 Strain : Genome accession: NC_009837 Putative virulence/resistance : Virulence Product : ShiF Function : - COG functional category : - COG ID : - EC number : - Position : 149552 - 150745 bp Length : 1194 bp Strand : + Note : transporter, major facilitator family subfamily; similar to AAZ29623; identified by match to protein family HMM PF07690 DNA sequence : ATGTCATCTAAGATCGAAGATACGCCCCAAAAAACCCTGTCCTGCTGGCCACTGGCGTTCAGTGCCGGTCTTCTCGGTAT CGGACAGAACGGTCTGCTGGTTGTACTCCCTGTTCTGGTCATACAGACAAATCTGAGTCTGTCTGTATGGGCTGCCCTGC TGATGCTGGGCTCAATGCTGTTTCTGCCATCTTCCCCATGGTGGGGAAAGCAAATTTCCCTTACTGGCAGTAAGACTGTG GTGCTGTGGGCTCTGGGAGGATATGGCGTAAGCTTTACCCTGCTTGGGCTGGGAAGCGTGCTGATGGCTACCGGTGCCGT AACAACAGCGGTGGGGTTGGGAATATTAATCATCGCCCGGATCGTCTACGGTCTGACCGTGTCAGCAATGGTGCCAGCCT GTCAGGTCTGGGCATTGCAGAGAGCGGGAGAAGGGAATCGCATGGCCGCTCTGGCAACCATCAGCTCCGGCCTGAGCTGC GGCAGGCTATTCGGGCCGCTGTGCGCGGCGGCAATGTTGGTCATTCACCCTCTGGCGCCAGTGTGGATGCTGATGGCAGC TCCGGTGTGGGCTGTGGTGATGCTTCTGCGGTTGCCCGGCACACCACCACAGCCCACACCGGAGCGCAAGAGCGTCAGCC TGAAGCGGGATTGCCTGCCTTATCTGCTTTGCGCAATGTTACTGGCTGCGGCAATGAGCATGATGCAGCTTGGACTTTCG CCAGCCCTTACTCGCCAGTTCGATACTGATACCACCACTATTAGCCAACAGGTGGCGTGGTTGTTGGGGCTGTCCGCAAT AGCTGCGCTTATCGCGCAGTTCGTGGTACTCCGTCCACAGCGCCTGACTCCAGTGGCTCTGCTCCTGAGTGCCGGGGTGT TGATGAGTAGTGGTCTGGCTATCATGCTCACTGAACAGCTATGGTTGTTTTACCTGGGCTGTGCAGTGCTGTCATTTGGG GCCGCTCTGGCAACACCCGCTTATCAACTTTTACTGAATGATAAGCTGGCCGACGGCGCAGGCGCGGGCTGGCTTGCGGC CAGTCACACACTTGGCTATGGGCTGTGCGCATTGTTGGTGCCACTGGCGTCGAAAACAGGTGTCTCAATCGCGCTGATTG TGACGGCATTATTTGCCGCTGTATTATTTACCATAGTGTCTGCATGTATTTGGCATTACCGTACAATCAAGTAA Protein sequence : MSSKIEDTPQKTLSCWPLAFSAGLLGIGQNGLLVVLPVLVIQTNLSLSVWAALLMLGSMLFLPSSPWWGKQISLTGSKTV VLWALGGYGVSFTLLGLGSVLMATGAVTTAVGLGILIIARIVYGLTVSAMVPACQVWALQRAGEGNRMAALATISSGLSC GRLFGPLCAAAMLVIHPLAPVWMLMAAPVWAVVMLLRLPGTPPQPTPERKSVSLKRDCLPYLLCAMLLAAAMSMMQLGLS PALTRQFDTDTTTISQQVAWLLGLSAIAALIAQFVVLRPQRLTPVALLLSAGVLMSSGLAIMLTEQLWLFYLGCAVLSFG AALATPAYQLLLNDKLADGAGAGWLAASHTLGYGLCALLVPLASKTGVSIALIVTALFAAVLFTIVSACIWHYRTIK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| imm | NP_839224.1 | membrane transport protein | Not tested | SHI-2 | Protein | 6e-126 | 92 |
| imm | NP_709453.1 | membrane transport protein | Not tested | SHI-2 | Protein | 6e-126 | 92 |
| shiF | AAD44744.1 | ShiF | Virulence | SHI-2 | Protein | 5e-126 | 92 |
| shiF | YP_002414047.1 | putative membrane transport protein, major facilitator superfamily | Not tested | Not named | Protein | 1e-125 | 91 |
| unnamed | AAD54670.1 | unknown | Not tested | SHI-2 | Protein | 1e-125 | 91 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| shiF | YP_001481329.1 | ShiF | VFG0614 | Protein | 3e-126 | 92 |
