Gene Information

Name : Spro_4722 (Spro_4722)
Accession : YP_001480943.1
Strain : Serratia proteamaculans 568
Genome accession: NC_009832
Putative virulence/resistance : Virulence
Product : pili assembly chaperone
Function : -
COG functional category : N : Cell motility
COG ID : COG3121
EC number : -
Position : 5217000 - 5217758 bp
Length : 759 bp
Strand : -
Note : PFAM: pili assembly chaperone; KEGG: yen:YE0782 pili chaperone protein

DNA sequence : 
ATGAAAACGCATTTTGTCATCAACAAACAGTGCCTGACCACCGCCACCCTGCTGGGCGCATTGTTGGCCCCGCAGGCGCA
GGCAGCGATAGCGCTGGACCGCACTCGGGTGATTTTTGACGGCGGCCAGAACTCGGTCAGCCTGAACATCAGCAACCAGA
ACAAACAGCTGCCGTACCTGGCGCAGGCTTGGCTGGAAGACGAGCAGGGCACCAAAATTCAGAGTCCGCTGGTGGTGCTG
CCACCGGTACAGCGCGTTGAGCCGGGCAAGCCGAGCCAGGTGAAAATCCAGGCGCTGTCGGCGGCCAAACAGCTGCCGCA
GGACCGCGAGACGCTGTACTACTTCAACCTGCGGGAAATCCCGCCGAAGAGCGACAAGCCGAACACCCTGCAGATAGCGT
TGCAGACGCGCATCAAGCTGTTCTACCGCCCGGCGGCGATCGCACCGCAGCAGAACGCAGCGCCCTGGCAGGAGAAGCTG
ACGCTGAGCAAGCAGGGCGACAAGTACCAGGTAAATAACCCGACGCCGTATTACATCACGATAGTCGATGCCAGCAGCAA
GAAAGGCGCGGAAGGGGTGAAGGGGTTTGAGCCGCTGATGGTGCCGCCAAAGGGCAATATATCGCTGGGCGTCAGCGCCA
CCGCGCTCGGTAGTAGCCCGGTGCTGACCTACATCAACGACTACGGCGGCCGTCCGCCGCTGACCTTTAACTGCAGCGGC
GGCAGTTGTCAGGTGGTGCCGGAGAAAGACAAGTCATAA

Protein sequence : 
MKTHFVINKQCLTTATLLGALLAPQAQAAIALDRTRVIFDGGQNSVSLNISNQNKQLPYLAQAWLEDEQGTKIQSPLVVL
PPVQRVEPGKPSQVKIQALSAAKQLPQDRETLYYFNLREIPPKSDKPNTLQIALQTRIKLFYRPAAIAPQQNAAPWQEKL
TLSKQGDKYQVNNPTPYYITIVDASSKKGAEGVKGFEPLMVPPKGNISLGVSATALGSSPVLTYINDYGGRPPLTFNCSG
GSCQVVPEKDKS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
prfD CAD42028.1 PrfD protein Virulence PAI II 536 Protein 5e-51 51
papD AAZ04423.1 P pilus chaperone Virulence PAI I APEC-O1 Protein 5e-51 51
papD AAL67413.1 PapD Virulence PAI II CFT073 Protein 5e-51 51
papD YP_854253.1 pilus assembly protein chaperone PapD Virulence PAI I APEC-O1 Protein 7e-51 51
papD_2 NP_757033.1 PapD protein Virulence PAI II CFT073 Protein 6e-51 51
papD YP_002414014.1 Chaperone protein PapD Not tested Not named Protein 6e-51 51
papD NP_755464.1 PapD protein Virulence PAI I CFT073 Protein 1e-45 50
pixD CAE85158.1 PixD protein Not tested PAI V 536 Protein 1e-50 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Spro_4722 YP_001480943.1 pili assembly chaperone VFG1547 Protein 3e-51 51
Spro_4722 YP_001480943.1 pili assembly chaperone VFG0896 Protein 3e-51 51
Spro_4722 YP_001480943.1 pili assembly chaperone VFG0885 Protein 5e-46 50